View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19812_low_2 (Length: 284)
Name: NF19812_low_2
Description: NF19812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19812_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 51878665 - 51878412
Alignment:
| Q |
12 |
aagaaaaagaagcgcaagatatataaactgtaaaagaactcgcacagttacaagtgtttcacttgtttataaataaattacaaacgaagaaatattaaaa |
111 |
Q |
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| T |
51878665 |
aagaaaaagaagcgcaagatatataaactgtaaaagatctcgcacagttacaagtgtttcacttgtt-ataaataaattacaaacgaagaaatattaaaa |
51878567 |
T |
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| Q |
112 |
tctatattttctcaaatttattcaaatccgttttcttgagatgtcttgaggttcgcatcattcttgtgcaagcataacctcgtgcgatgcagtcagaaaa |
211 |
Q |
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| T |
51878566 |
tctatattttctcaaatttattcaaatccgttttcttgagatgtcttgaggttcgcatcattcttgtgcaagcataacctcgtgcgatgcagtcagaaaa |
51878467 |
T |
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| Q |
212 |
ttgattctttttaaaaattattttgtttagttaataatatgattgccgatgtcat |
266 |
Q |
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| T |
51878466 |
ttgattttttcaaaaagttatttagtttagttaatagtatgattgccgatgtcat |
51878412 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 18756345 - 18756410
Alignment:
| Q |
199 |
tgcagtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgt |
263 |
Q |
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| T |
18756345 |
tgcagtcagaaaattgattttttggaaaaagttattttgtttagccaataatataattgccgatgt |
18756410 |
T |
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