View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19813_high_10 (Length: 457)

Name: NF19813_high_10
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19813_high_10
NF19813_high_10
[»] chr4 (4 HSPs)
chr4 (5-444)||(29783661-29784099)
chr4 (5-444)||(29787668-29788106)
chr4 (155-205)||(48362743-48362793)
chr4 (128-210)||(968471-968554)
[»] chr8 (1 HSPs)
chr8 (97-204)||(20081469-20081577)
[»] chr3 (1 HSPs)
chr3 (160-237)||(9844959-9845036)
[»] chr2 (1 HSPs)
chr2 (124-219)||(5267272-5267367)
[»] scaffold0901 (1 HSPs)
scaffold0901 (66-178)||(3553-3667)
[»] scaffold0900 (1 HSPs)
scaffold0900 (66-178)||(950-1064)
[»] chr6 (1 HSPs)
chr6 (196-232)||(2022673-2022709)
[»] chr1 (1 HSPs)
chr1 (247-279)||(42636127-42636159)


Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 5 - 444
Target Start/End: Original strand, 29783661 - 29784099
Alignment:
Q  5 atcccagctgggagcgaaaacaaaactccagaacggggtacaattgcattatttgtgggcgtttactttctaacatcattttctattttcactttcaatt 104  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29783661 atcccagctgggagctcaaacaaaactccagaacgaggtacaattgcattctttgtggccgtttactttctaacatcattttctattttcactttcaatt 29783760  T
Q  105 tttattttgtatataggtagctggaatgacatttggttatggttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29783761 tttattttgtatataggtagctggaatgacatttggttatggttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttc 29783860  T
Q  205 tagaaataccgaaaacaatgctttcaaagtttgcggaattctaaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaatgttta 304  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29783861 tagaaataccgaaaacaatgctttcaaagtttgccgaattctaaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaatgttta 29783960  T
Q  305 ttttgttagtaaaaatgaaaacagaaaacaatagaagttaatggccccactgttttttaaataacggacatgttctaatatctttataacaaattttatt 404  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||    
T  29783961 ttttgttagtaaaaatgaaaacagaaaacaatagaagtaaatggccccactg-tttttaaataagggacatattctaatatctttataacaaatttaatt 29784059  T
Q  405 acaaggtttttattttctaagcatgcttttattcgttcat 444  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29784060 acaaggtttttattttctaagcatgcttttattcgttcat 29784099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 5 - 444
Target Start/End: Original strand, 29787668 - 29788106
Alignment:
Q  5 atcccagctgggagcgaaaacaaaactccagaacggggtacaattgcattatttgtgggcgtttactttctaacatcattttctattttcactttcaatt 104  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29787668 atcccagctgggagctcaaacaaaactccagaacgaggtacaattgcattctttgtggccgtttactttctaacatcattttctattttcactttcaatt 29787767  T
Q  105 tttattttgtatataggtagctggaatgacatttggttatggttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttc 204  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29787768 tttattttgtatataggtagctggaatgacatttggttacggttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttc 29787867  T
Q  205 tagaaataccgaaaacaatgctttcaaagtttgcggaattctaaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaatgttta 304  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29787868 tagaaataccgaaaacaatgctttcaaagtttgccgaattctaaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaatgttta 29787967  T
Q  305 ttttgttagtaaaaatgaaaacagaaaacaatagaagttaatggccccactgttttttaaataacggacatgttctaatatctttataacaaattttatt 404  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||    
T  29787968 ttttgttagtaaaaatgaaaacagaaaacaatagaagtaaatggccccactg-tttttaaataagggacatattctaatatctttataacaaatttaatt 29788066  T
Q  405 acaaggtttttattttctaagcatgcttttattcgttcat 444  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29788067 acaaggtttttattttctaagcatgcttttattcgttcat 29788106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 48362793 - 48362743
Alignment:
Q  155 tttagttgtgatatagagaagatagtagctaactagagagaatgcatttct 205  Q
    |||| |||||||| ||||||||| | |||||||||||||||||||||||||    
T  48362793 tttaattgtgatagagagaagatggaagctaactagagagaatgcatttct 48362743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 968471 - 968554
Alignment:
Q  128 gaatgacatttggttatggttttatcttt-tagttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaa 210  Q
    |||||||| |||||||||  ||| ||||| || || ||||| ||||||||||  ||||||||||||||||| ||||||| ||||    
T  968471 gaatgacaattggttatgaatttttctttctatttatgatagagagaagataaaagctaactagagagaatacatttcttgaaa 968554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 20081577 - 20081469
Alignment:
Q  97 tttcaatttttattttgtatataggtagctggaatgacatttggttatggttttatcttt-tagttgtgatatagagaagatagtagctaactagagaga 195  Q
    |||||||||||  |||| || ||||| ||||||||| |||||| |||||  ||| ||||| || |||||||| | |||| |||| |||||||||||||||    
T  20081577 tttcaattttttctttgaatgtaggtggctggaatgccatttgtttatgaatttttctttctaattgtgatagacagaatatagaagctaactagagaga 20081478  T
Q  196 atgcatttc 204  Q
    |||||||||    
T  20081477 atgcatttc 20081469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 9844959 - 9845036
Alignment:
Q  160 ttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttg 237  Q
    |||||||| ||||||||||| || |||||||||||||||||||| | |||| |  ||||| |||| ||| ||||||||    
T  9844959 ttgtgatagagagaagatagaagttaactagagagaatgcatttttggaaacaatgaaaataatgttttgaaagtttg 9845036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 5267272 - 5267367
Alignment:
Q  124 gctggaatgacatttggttatggttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaa 219  Q
    ||||||||| |||||||||||| ||||  |||| | ||||  || ||||||| | | ||||||| ||||||||| | |||||||||| ||||||||    
T  5267272 gctggaatggcatttggttatgatttttcctttaaattgtcttagagagaagttggaagctaacaagagagaatacttttctagaaacaccgaaaa 5267367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0901 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0901
Description:

Target: scaffold0901; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 3553 - 3667
Alignment:
Q  66 tttactttctaacatcattttcta-ttttcactttcaatttttattttgtatataggtagctggaatgacatttggttat-ggttttatcttttagttgt 163  Q
    ||||||||||||||||||| || | |||||| ||| |  |||||||||||| || ||  |||  ||||||||||||||||   |||| ||||| ||||||    
T  3553 tttactttctaacatcattctcaatttttcaattttatattttattttgtacatggggggctaaaatgacatttggttatatattttctctttcagttgt 3652  T
Q  164 gatatagagaagata 178  Q
    |||| ||||||||||    
T  3653 gatagagagaagata 3667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0900 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0900
Description:

Target: scaffold0900; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 1064 - 950
Alignment:
Q  66 tttactttctaacatcattttcta-ttttcactttcaatttttattttgtatataggtagctggaatgacatttggttat-ggttttatcttttagttgt 163  Q
    ||||||||||||||||||| || | |||||| ||| |  |||||||||||| || ||  |||  ||||||||||||||||   |||| ||||| ||||||    
T  1064 tttactttctaacatcattctcaatttttcaattttatattttattttgtacatggggggctaaaatgacatttggttatatattttctctttcagttgt 965  T
Q  164 gatatagagaagata 178  Q
    |||| ||||||||||    
T  964 gatagagagaagata 950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 2022673 - 2022709
Alignment:
Q  196 atgcatttctagaaataccgaaaacaatgctttcaaa 232  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  2022673 atgcatttccagaaataccgaaaacaatgttttcaaa 2022709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 42636159 - 42636127
Alignment:
Q  247 aaatattcaatctattttcaaatgcattttcaa 279  Q
    |||||||||||||||||| ||||||||||||||    
T  42636159 aaatattcaatctattttgaaatgcattttcaa 42636127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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