View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_high_15 (Length: 409)
Name: NF19813_high_15
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 35787399 - 35787016
Alignment:
| Q |
1 |
ataacactgaacgaggtaaccaagtagtcactctccatcttttcttttttcattcatctctcacacactctttccttttaaaaatggattcacctcttca |
100 |
Q |
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| T |
35787399 |
ataacactgaacgaggtaaccaagtagtcactctccatcttttcttttttcattcatctctcacacactctttccttttaaaaatggattcacctcttca |
35787300 |
T |
|
| Q |
101 |
tcatgttcaagaaaccaaacccaccgccaacaccgttgttactaccactccaagtgaaacatctaacaacagcactgataacaacagtaataacagcagc |
200 |
Q |
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| T |
35787299 |
tcatgttcaagaaaccaaacccaccgccaacaccgttgttactaccactccaagtgaaacatctaacaacagcactgataacaacagtaataacagcagc |
35787200 |
T |
|
| Q |
201 |
agtagtaacactaccaacaacaccaacaacaataaaagtaaccgtaaatgcaaaggtaaaggtggacctgataacaacaaattcagataccgtggtgtaa |
300 |
Q |
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| T |
35787199 |
agcagtaacactaccaac---------aacaataaaagtaaccgtaaatgcaaaggtaaaggtggacctgataacaacaaattcagataccgtggtgtaa |
35787109 |
T |
|
| Q |
301 |
gacaacgtagttggggtaaatgggttgctgaaattcgtgaaccacgtaaacgtactcgtaaatggcttggtactttttcaactgctgaagatg |
393 |
Q |
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| T |
35787108 |
gacaacgtagttggggtaaatgggttgctgaaattcgtgaaccacgtaaacgtactcgtaaatggcttggtactttttcaactgctgaagatg |
35787016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 25896674 - 25896641
Alignment:
| Q |
311 |
ttggggtaaatgggttgctgaaattcgtgaacca |
344 |
Q |
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| T |
25896674 |
ttggggtaaatgggttgctgagattcgtgaacca |
25896641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 52690554 - 52690586
Alignment:
| Q |
311 |
ttggggtaaatgggttgctgaaattcgtgaacc |
343 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
52690554 |
ttggggtaaatgggttgctgaaatccgtgaacc |
52690586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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