View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_high_16 (Length: 407)
Name: NF19813_high_16
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 401
Target Start/End: Complemental strand, 7406189 - 7405808
Alignment:
| Q |
20 |
gctgctactgcaaaggtgagtgacgaaaataaggaaacataaataatgatcattagcatatagaacacattatattggtgtttggtagatgcttgaattg |
119 |
Q |
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| T |
7406189 |
gctgctactgcaaagatgagtgacgaaaataaggaaacataaacaatgatcattagcatatagaacacattatattggtgtttggtagatgcttgaattg |
7406090 |
T |
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| Q |
120 |
aactcattttagtccaacttattggcaacaaatattcaagtcacaatttcacattcttaccttttgctattgctacccattgagacgaaatccttgtgca |
219 |
Q |
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| T |
7406089 |
aactcattttagtccaacttattggcaacaaatattcaagtcacaatttcacattcataccttttgctattgccacccattgagacgaaatccttgtgca |
7405990 |
T |
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| Q |
220 |
ttctttcccatgttgaatcatatatgtggattttctttgtgattctacaatatacgcagtatagactaattcatattagtaaatcttaagagttttgaat |
319 |
Q |
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| T |
7405989 |
ttctttcccatgttgaatcatatatgtggattttctttgtgattctacaatatacgcagtatagactaattcatattagtaaatcttaagagttttgaat |
7405890 |
T |
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| Q |
320 |
tcaatcttctaagtggcatgatgcctaaccttgttaattaactgctgcgttgaacaatgcagcttgaagatattgatgatgt |
401 |
Q |
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| T |
7405889 |
tcaatcttctaagtggcatgatgcctaaccttgttaattaactgctgcgttgaacaatgcagcttgaagatattgatgatgt |
7405808 |
T |
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