View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_high_18 (Length: 406)
Name: NF19813_high_18
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 392
Target Start/End: Complemental strand, 44852951 - 44852561
Alignment:
| Q |
12 |
atgaatatagaaataatagacacatacaaatcagcagtcatatcagcattcatggaaaggataacagtcacacgtctctttttaaaaatgaaagttctta |
111 |
Q |
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| T |
44852951 |
atgaatatagaaataatagacacatacaaatcagcagtcatatcagcattcatggaaaggataacagtcacacgtctctttttaaaaatgaaagttctta |
44852852 |
T |
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| Q |
112 |
aaaagactaataatgcaaacaaacagaacgtaatttggtnnnnnnn----------gaaccttaaaaatcaatatatgacaaacccgtaattaaaagaag |
201 |
Q |
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| T |
44852851 |
aaaagactaataatgcaaacaaacagaacgtaatttggttaaaaaaaaaaaaaaaagaaccttaaaaatcaatatatgacaaacccgtaattaaaagaag |
44852752 |
T |
|
| Q |
202 |
acatgtatattgtaccaaaacaaaaggaagacatacatacatacatacaattttacctaaattagagtggcatagactttttcaaagctttatctatgtt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44852751 |
acatgtatattgtaccaaaacaaaaggaagacatacatacatacatacaattttacctaaattagagtggcatagactttttcaaagctttatctatgtt |
44852652 |
T |
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| Q |
302 |
gctccatacgtttacgataatggcaacaaaggtgagcactcaactcaagaatcatgacagcaaaatatataaacaaaacatgtcacgattg |
392 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44852651 |
gctccatacatttacgataatggcaacaaaggtgagcactcaactcaagaatcatgacagcaaaatatataaacaaaacatgtcacgattg |
44852561 |
T |
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