View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19813_high_21 (Length: 384)
Name: NF19813_high_21
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 2323473 - 2323826
Alignment:
| Q |
19 |
atttcaggaacatataggagtgtgcttaattagtgtttaacatgaatttttcaaaaaagtaatgataactgagtagctgttacttaattatctaagctat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2323473 |
atttcaggaacatataggagtgtgcttaattagtgtttaacatgaatttttcaaaaaagtaatgataactgagtagctgttacttaattatctaagctat |
2323572 |
T |
|
| Q |
119 |
gaatttttcagcgcataatggccaacttggaaaccttgcttgaattcaagccaaccggaaaagtcaagaagagtggtaagactgttatgggagtttatgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2323573 |
gaatttttcagcgcataatggccaacttggaaaccttgcttgaattcaagccaaccggaaaagtcaagaagagtggtaagactgttatgggagtttatgc |
2323672 |
T |
|
| Q |
219 |
tgaccaagaagttctcgataatctgcgtgatctgtgtcttggaaattgtcattcgtgtaagtaaattaatcttcttattatcatgcatatccttgtgata |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2323673 |
tgaccaagaagttctcgataatctgcgtgatctgtgtcttggaaattgtcattcgtgtaagtaaattaatcttcttattatcatgcatatccttgtgata |
2323772 |
T |
|
| Q |
319 |
tttataatgtttgagtcttgattaatcttttttctattcttgtgcatatatatt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2323773 |
tttataatgtttgagtcttgattaatcttttttctattcttgtgcatatatatt |
2323826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University