View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_high_30 (Length: 302)
Name: NF19813_high_30
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 24311168 - 24311455
Alignment:
| Q |
1 |
aaaagtctattagacctatcagatcagtttgtatatatgtaatgaattgtgttagagacataccatagacttaagagtttattaatttatggtttaagac |
100 |
Q |
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|||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24311168 |
aaaagtctattagatctatcagatgaatttgtatatatgtaatgaattgtgttagagacataccatagacctaagagtttattaatttatggtttaagac |
24311267 |
T |
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| Q |
101 |
ttattcttt-aagggacataaaaaataggaggatcattaacatctactattaaaagatgatatatatcatcattgtattttaaatatttttaaagtacta |
199 |
Q |
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| T |
24311268 |
ctattcttttaagggacataaaaaataggaggatcattaacatctactattaaaagacgatatatatcatcattgtattttaaaattttttaaagtacta |
24311367 |
T |
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| Q |
200 |
gtccatattgtaccacttataaatgtggtccatatattagagccaattgtaactcagccataaaaactaatgattcatatttggatgt |
287 |
Q |
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| T |
24311368 |
gtccatattgtaccacttataaatgtggtccatatattagagccaattgtaactcagccataaaaactaatgatttatatttggatgt |
24311455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 24353509 - 24353796
Alignment:
| Q |
1 |
aaaagtctattagacctatcagatcagtttgtatatatgtaatgaattgtgttagagacataccatagacttaagagtttattaatttatggtttaagac |
100 |
Q |
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|||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24353509 |
aaaagtctattagatctatcagatgaatttgtatatatgtaatgaattgtgttagagacataccatagacctaagagtttattaatttatggtttaagac |
24353608 |
T |
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| Q |
101 |
ttattcttt-aagggacataaaaaataggaggatcattaacatctactattaaaagatgatatatatcatcattgtattttaaatatttttaaagtacta |
199 |
Q |
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| T |
24353609 |
ctattcttttaagggacataaaaaataggaggatcattaacatctactattaaaagacgatatatatcatcattgtattttaaaattttttaaagtacta |
24353708 |
T |
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| Q |
200 |
gtccatattgtaccacttataaatgtggtccatatattagagccaattgtaactcagccataaaaactaatgattcatatttggatgt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24353709 |
gtccatattgtaccacttataaatgtggtccatatattagagccaattgtaactcagccataaaaactaatgatttatatttggatgt |
24353796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 24311455 - 24311507
Alignment:
| Q |
232 |
tatattagagccaattgtaactcagccataaaaactaatgattcatatttgga |
284 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24311455 |
tatattagaaccaattgtaactcagtcataaaaactaatgattcatatttgga |
24311507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 24353796 - 24353848
Alignment:
| Q |
232 |
tatattagagccaattgtaactcagccataaaaactaatgattcatatttgga |
284 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24353796 |
tatattagaaccaattgtaactcagtcataaaaactaatgattcatatttgga |
24353848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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