View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19813_high_36 (Length: 274)
Name: NF19813_high_36
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 824321 - 824567
Alignment:
| Q |
17 |
aaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctccacaaacttagacttacccaaattgacaagag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
824321 |
aaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctccacaaacttagacttacccaaattgacaagag |
824420 |
T |
|
| Q |
117 |
catatatgaatcaatgttcatgctcttattttatgtggaaagcattttctacatcagtgtctctccgcatagataaatccacattgtacccaacacatta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
824421 |
catatatgaatcaatgttcatgctcttattttatgtggaaagcattttctacatcagtgtctctccgcatagataaatccacattgtacccaacacatta |
824520 |
T |
|
| Q |
217 |
tgaatagtatgcatgttatctcgatatatgttgaattaacttttcat |
263 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
824521 |
taaatagtatgcatgttacctcgatatatgttgaattaacttttcat |
824567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 990928 - 990870
Alignment:
| Q |
23 |
cagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaat |
81 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||| |||| ||||| ||| |||||||| |
|
|
| T |
990928 |
cagttgctacaagcgttttgtccaagaggtggactaatctctggcattatcttcccaat |
990870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 22054549 - 22054600
Alignment:
| Q |
26 |
ttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcc |
77 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
22054549 |
ttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttcc |
22054600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 35766357 - 35766399
Alignment:
| Q |
25 |
gttgcaacaagtgttttgtccaagagatggactcatctatggc |
67 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
35766357 |
gttgccacaagcgttttgtccaagagatggactcatctttggc |
35766399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 40639900 - 40639961
Alignment:
| Q |
23 |
cagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctc |
84 |
Q |
| |
|
||||||||||||| || | || |||||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
40639900 |
cagttgcaacaagcattctttcaaagagatggattcatctatggcaccatgttcctaatctc |
40639961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University