View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_high_39 (Length: 258)
Name: NF19813_high_39
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_39 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 25080486 - 25080247
Alignment:
| Q |
20 |
tccattgtaatcaatagttatatctcatttgaactctaaccggattattcagaagtaatatcttcaattttcattagaattttaccgtttcatttattat |
119 |
Q |
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| T |
25080486 |
tccattgtaatcaacagttatatcccatttgaactttaactggattattcagaagtaatatcttccattttcattagaattttactgtttcatttattat |
25080387 |
T |
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| Q |
120 |
ttcagttctaatactaaattgaatcctatcacaatga-tccctttgaattttactctctttcaagctttcaaacctctttacattgtaggcttaaaattg |
218 |
Q |
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| T |
25080386 |
ttcagttctaacactaaattgaatcccatcacaatgattccctttgaattttactctctttcaagctttcaaacctctttacattgtaggcttaaaattg |
25080287 |
T |
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| Q |
219 |
tgaatgtgtctgcacaagcatttactccttcatagttgca |
258 |
Q |
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| T |
25080286 |
tgaatgtgcctgcacaagcatttactccttcatagttgca |
25080247 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 33394325 - 33394379
Alignment:
| Q |
96 |
gaattttaccgtttcatttattatttcagttctaatactaaattgaatcctatca |
150 |
Q |
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| T |
33394325 |
gaattttactgtttcatttactatttcagttctaatactaaattaaatcctatca |
33394379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 31787451 - 31787413
Alignment:
| Q |
112 |
tttattatttcagttctaatactaaattgaatcctatca |
150 |
Q |
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| T |
31787451 |
tttactatttcagttctaatactaaattgaatcctatca |
31787413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 31787537 - 31787488
Alignment:
| Q |
21 |
ccattgtaatcaatagttatatctcatttgaactctaaccggattattca |
70 |
Q |
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| T |
31787537 |
ccattgtaatcgacagttagatcccatttgaactctaactggattattca |
31787488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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