View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19813_high_4 (Length: 653)
Name: NF19813_high_4
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 169; Significance: 3e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 403 - 582
Target Start/End: Complemental strand, 38941649 - 38941472
Alignment:
| Q |
403 |
tagcagaagcatcagaaacatatcagttttatttgaatagcttgctgcatgagattgaagtgattaggattaaacttattcttacttggtcaattaagct |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38941649 |
tagcagaagcatcagaaacatatcagttttatttgaatagcttgctgcatgagattgaagtgattaggattaaacttattcttacttggtcaattaagct |
38941550 |
T |
|
| Q |
503 |
ctagcttataatttttgctatttcttcaattcttattatttttccatacaattctgttttaagaaaaatagtacaataca |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38941549 |
ctagcttataatttttgctatttcttcaattcttattatttttccatacaattctgttttaag--aaatagtacaataca |
38941472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 38942004 - 38941859
Alignment:
| Q |
13 |
catcatttgcaaaacaggtctgtgttaagt---acatggacatgcacttgttttataacaaaataaaatgttaataaatagaatcaagtgaagtgaatgc |
109 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38942004 |
catcatttgcaaaacagatctgtgttaagacagacatggacatgcacttgttttataacaaaataaaatgttaataaatagaatcaagtgaagtgaatgc |
38941905 |
T |
|
| Q |
110 |
ttgagttacaatttattcaatattataacaagagtttcagttccaa |
155 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38941904 |
ttgagttacaatttatttaatattataacaagagtttcagttccaa |
38941859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 634
Target Start/End: Complemental strand, 38941433 - 38941400
Alignment:
| Q |
601 |
aactattcagtttatggaaatgttatcaactgcg |
634 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
38941433 |
aactattcagtttatggaaatgttatcaactgcg |
38941400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 382
Target Start/End: Complemental strand, 38941842 - 38941812
Alignment:
| Q |
352 |
gctgggaggaggattgaaccctcaacctcag |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38941842 |
gctgggaggaggattgaaccctcaacctcag |
38941812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University