View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_high_42 (Length: 249)
Name: NF19813_high_42
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_42 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0927 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 28564862 - 28564615
Alignment:
| Q |
10 |
aagaaaatataccaagcttttataggatgcatgctcatgtatctatacaagaaagcataatagtttattatatatcattctataatgtttttgagtttac |
109 |
Q |
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| T |
28564862 |
aagaaaatataccaagcttttataggatgcatactcatgtatctatacaagaaagcataaaagtttattatctatcattctataatgtttttgagtttac |
28564763 |
T |
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| Q |
110 |
aacagtatctattcatgaaaccaagcttttataggatgtttgctcatgtattagaagcaatggtcactgtcatatatct-----attt---agctagcag |
201 |
Q |
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| T |
28564762 |
aacagtatctattcatgaaaccaagcttttataggatgtttgctcatgtattagaagcaatggtcactgtcatatttctttaaaatatgggatttagcag |
28564663 |
T |
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| Q |
202 |
tctaggatacgtggttggctagcattgtattatgatggctagtgattt |
249 |
Q |
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| T |
28564662 |
tctaggatatgtggttggctagcattgtattatgatggctagtgattt |
28564615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 28578881 - 28578832
Alignment:
| Q |
97 |
tttttgagtttacaacagtatctattcatgaaaccaagcttttataggat |
146 |
Q |
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| T |
28578881 |
tttttgagtttacaacaatatccatacatgaaaccaagcttttataggat |
28578832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 1317 - 1408
Alignment:
| Q |
75 |
tattatatatcattctataatg-tttttgagtttacaacagtatctattcatgaaaccaagcttttataggatgtttgctcatgtattagaa |
165 |
Q |
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| T |
1317 |
tattatttttcattctataatcatttttgagtttacaacaatatctatgcttgaaacctagctcttctaggatgtttgctcctatattagaa |
1408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 28961135 - 28961191
Alignment:
| Q |
84 |
tcattctataatg-tttttgagtttacaacagtatctattcatgaaaccaagctttt |
139 |
Q |
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| T |
28961135 |
tcattctatgatgatttttgagtttacaacagtatctatacatgaacccaagctttt |
28961191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 1171 - 1213
Alignment:
| Q |
204 |
taggatacgtggttggctagcattgtattatgatggctagtga |
246 |
Q |
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| T |
1171 |
taggatatgtggttggctagcattgtgttatgatggttagtga |
1213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 1171 - 1213
Alignment:
| Q |
204 |
taggatacgtggttggctagcattgtattatgatggctagtga |
246 |
Q |
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| T |
1171 |
taggatatgtggttggctagcattgtgttatgatggttagtga |
1213 |
T |
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