View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_high_51 (Length: 202)
Name: NF19813_high_51
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_51 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 6310910 - 6310746
Alignment:
| Q |
29 |
aatgattcaaaatttctcagcataattgcgatgagaaattttaaattgagattctcgttaaagattatgattcatttg-----tgcagataaaatctcaa |
123 |
Q |
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| T |
6310910 |
aatgactcaaaatttctcagcataattgcgatgaggaattttaaattgaaattctcgttaaagattatgattcatttgtaaattgcagataaaacctcaa |
6310811 |
T |
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| Q |
124 |
aatccttttcacttttaaaaatttgagttaagaattagtacaataaaatctaaataactcattat |
188 |
Q |
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| T |
6310810 |
attccttttcacttttaaagatccgagttaagaattagtacaatgaaatctaaataactcattat |
6310746 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 21569605 - 21569676
Alignment:
| Q |
35 |
tcaaaatttctcagcataattgcgatgagaaattttaaattgagattctcgttaaagattatgattcatttg |
106 |
Q |
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| T |
21569605 |
tcaaaatttctaagtaaaattgcaataagaaattgtaaattgagatactagctaaagattatggttcatttg |
21569676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 6267841 - 6267902
Alignment:
| Q |
20 |
atgacaaacaatgattcaaaatttctcagcataattgcgatgagaaattttaaattgagatt |
81 |
Q |
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| T |
6267841 |
atgacacacaatgaatcaaaatttctaagcaaaattacgattaggaattttaaatcgagatt |
6267902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 44659949 - 44659901
Alignment:
| Q |
59 |
atgagaaattttaaattgagattctcgttaaagattatgattcatttgt |
107 |
Q |
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| T |
44659949 |
atgaggaattctaaatcgagattctcgttaatgattatgattcttttgt |
44659901 |
T |
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