View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_high_6 (Length: 586)
Name: NF19813_high_6
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 37209654 - 37210217
Alignment:
| Q |
1 |
aaactagtaatggagtcatattgtcttatggttcaaaggatgtgtatgcaacaataacagcagtactcaatagtattagtatccaataaaacttaaccct |
100 |
Q |
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| T |
37209654 |
aaactagtaatggagtcatattgttttatggttcaaaggatgtgtatgcaacaataacagcagtactcaatagtattagtatccaataaaacttaaccct |
37209753 |
T |
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| Q |
101 |
tttgccttaaggttggatccatccttttgcctccatgttgtcttaacaaaatcatgatatctcgactgtcttccaattagatattcgcccatttaaaatc |
200 |
Q |
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| T |
37209754 |
tttgccttaaggttggatccatccttttgcctccatgttctcttaacaaaatcatgatatctcgactgtcttccaattagatattcgcccatttaaaatc |
37209853 |
T |
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| Q |
201 |
aaaaccaagttccttatataataatcacttcatgccaaggatctacgccttagaaatcaattccctactataaaacaattgtgtgagctaaggacctata |
300 |
Q |
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| T |
37209854 |
aaaaccaagttccttatataataatcacttcatgccaaggatctacgccttagaaatcaattccctactataaaacaattgtgtgagctaaggacctata |
37209953 |
T |
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| Q |
301 |
ctcgtgaaacagctcgttgctgttagccgtcactgcaatcgatgattttggcagtcaattaagatcatacggttaagattctgagttttcgatttgttat |
400 |
Q |
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| T |
37209954 |
ctcgtgaaacagctcgttgctgttagccgtcactgcaatcgatgattttggcagtcaattaagatcatacggttaagattctgagttttcgatttgttat |
37210053 |
T |
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| Q |
401 |
aatcaagatgtgaaccgtccaatctctatccatcagcttagaagaactgactatagtgacaataagaaagtttaaccataggaaattcaagtccctatat |
500 |
Q |
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| T |
37210054 |
aatcaagatgtgaaccgtccaatctctatccatcagcttagaagaactgactatagtgacaataagaaagtttaaccataagaact----gac----tat |
37210145 |
T |
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| Q |
501 |
actagttaattccaaaatatggttttgcgatccacaaggctaaaatgctataacaaatttaaatgatatatg |
572 |
Q |
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| T |
37210146 |
actagttaattccaaaatatggttttgcgatccacaaggctaaaatgctataacaaatttaaatgatatatg |
37210217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 441
Target Start/End: Original strand, 53608737 - 53608820
Alignment:
| Q |
358 |
attaagatcatacggttaagattctgagttttcgatttgttataatcaagatgtgaaccgtccaatctctatccatcagcttag |
441 |
Q |
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|||||||||| || ||| ||||||| || | || ||||||||| |||||||||| || ||||||||||||||||| ||||||| |
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| T |
53608737 |
attaagatcaaacagttgagattctaagctctcaatttgttattatcaagatgtaaattgtccaatctctatccattagcttag |
53608820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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