View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19813_low_10 (Length: 461)
Name: NF19813_low_10
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 32894790 - 32894337
Alignment:
| Q |
1 |
atcaaattaaaagtcagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactattaatttttaacattagatggcatgactcaaaatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32894790 |
atcaaattaaaagtcagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactgataatttttaacattagatggcatgactcaaattta |
32894691 |
T |
|
| Q |
101 |
tatacttaactcaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaattagttcacacttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32894690 |
tatacttaactcaattcattgcattcatgtgataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacacttta |
32894591 |
T |
|
| Q |
201 |
taagagagtttgcaaagattgtctcaatgaagaattatttatatctaactaacaagagaatattatatcatgcttacatatgcatataaagaactttaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
32894590 |
taagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaatattatatcctgcttacatatgcatataaagaattttaac |
32894491 |
T |
|
| Q |
301 |
attttgatcactttaactacttctgtgcaagacgtacacacataatttttcttaaggcatcttcccatatatggtttacatgttatatagaccacaacag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32894490 |
attttgatcactttaactacttctgtgcaagacatacacacataatttttcttaaggcatcttcccatatatggcttacatgttatatagaccacaacag |
32894391 |
T |
|
| Q |
401 |
aattttctatccacatgtatacattaataactgagacataatatttgatgatgt |
454 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32894390 |
aatttactatccacatgtatacattaataactgagacataatatttcatgatgt |
32894337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 26052020 - 26051634
Alignment:
| Q |
1 |
atcaaattaaaagtcagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactattaatttttaacattagatggcatgactcaaaatta |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
26052020 |
atcaaattaaaagttagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactataaatttttaacattagatggcatgactcaaattta |
26051921 |
T |
|
| Q |
101 |
tatacttaactcaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaattagttcacacttta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26051920 |
tatacttaacttaattcattgcattcatgtaataaagaacttagtaagtactcatacaatataaaaattaagtaactttaatcaatcagttcacacttta |
26051821 |
T |
|
| Q |
201 |
taagagagtttgcaaagattgtctcaatgaagaattatttatatctaactaacaagagaatattatatcatgcttacatatgcatataaagaactttaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26051820 |
taagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaatattatatcctgcttacatatgcatataaagaactttaac |
26051721 |
T |
|
| Q |
301 |
attttgatcactttaactacttctgtgcaagacgtacacacataatttttcttaaggcatcttcccatatatggtttacatgttata |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26051720 |
attttgatcactttaactacttctgtgcaagacgtacacacataatttttcttaaggcatcttcccatatatggtttacatgttata |
26051634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 27076923 - 27076603
Alignment:
| Q |
1 |
atcaaattaaaagtcagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactattaatttttaacattagatggcatgactcaaaatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
27076923 |
atcaaattaaaagtcagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactataaatttttaacattagatggcatgactcaaattta |
27076824 |
T |
|
| Q |
101 |
tatacttaactcaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaattagttcacacttta |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27076823 |
tatacttaactaaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacacttta |
27076724 |
T |
|
| Q |
201 |
taagagagtttgcaaagattgtctcaatgaagaattatttatatctaactaacaagagaatattatatcatgcttacatatgcatataaagaactttaac |
300 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27076723 |
taacagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaatattatatcctgcttacatatgcatataaagaactttaac |
27076624 |
T |
|
| Q |
301 |
attttgatcactttaactact |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27076623 |
attttgatcactttaactact |
27076603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University