View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_12 (Length: 438)
Name: NF19813_low_12
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 35232366 - 35232665
Alignment:
| Q |
16 |
atgaaggcagggattttggcaaattttacctagagattattgcatgaaagattacctaccagagaagctttggggaagagagacatgcttttagatcaac |
115 |
Q |
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| T |
35232366 |
atgaaggcagcgattgtggcaaattttgcctggaatttattgcatgaaaggttacctaccagagaagctttggggaagagagacatgcttttagatcaaa |
35232465 |
T |
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| Q |
116 |
atcagaaatcttatcttgtaactaatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaataggactgcggtttgatg |
215 |
Q |
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| T |
35232466 |
atccgcaatcttatcttgtaactgatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaataggactgcggtctgatg |
35232565 |
T |
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| Q |
216 |
aatatgaatatacttatatacaacaacctttgaaatcaaagtttttaataatgtgataacatgtgactgaaaatattaataatggcaatagatcaaaatg |
315 |
Q |
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| T |
35232566 |
aatataaatgtacttatatacaaaaacctttgaaatcaaagtttttaataatgtgataacatgtgactgaaaattttaataatggcaatagatcaaaatg |
35232665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 313 - 420
Target Start/End: Original strand, 29284955 - 29285062
Alignment:
| Q |
313 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatccacgtgcaagtgctcgaactgtggcccaaaatctggtttttgtaat |
412 |
Q |
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| T |
29284955 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatccacgtgcaagtgctcgaactgtggcccaaaatctggtttttgtaat |
29285054 |
T |
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| Q |
413 |
agtcgctt |
420 |
Q |
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| T |
29285055 |
agtcgctt |
29285062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 313 - 420
Target Start/End: Original strand, 35232852 - 35232960
Alignment:
| Q |
313 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatccacgtgcaagtgctcgaactgtggcccaaaatctggtttttgtaat |
412 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35232852 |
atgcaaagaaagcagctggtgtgaagagaagcaagcctattattacttcctatccatgtgcaagtgctcgaactgtggcccaaaatctggtttttgtaat |
35232951 |
T |
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| Q |
413 |
-agtcgctt |
420 |
Q |
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| T |
35232952 |
cagtcgctt |
35232960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 29283596 - 29283754
Alignment:
| Q |
66 |
attacctaccagagaagctttggggaagagagacatgcttttagatcaacatcagaaatcttatcttgtaactaatactaaacatgtacactgtaccaca |
165 |
Q |
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| T |
29283596 |
attacttactagagaagctttggggaagagagaagtgattctagat-aacttcaacaatat-atcttgtaacagatactaaacatgtagactgtagcaca |
29283693 |
T |
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| Q |
166 |
taggaacaagttgtacaaccgcatttacaaaataggactgcggtttgatgaatatgaatata |
227 |
Q |
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| T |
29283694 |
taggagcaagttgtacaactgcttttacaaaa-cggactggggtctgatgaatataaatata |
29283754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 35235254 - 35235332
Alignment:
| Q |
120 |
gaaatcttatcttgtaactaatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaat |
198 |
Q |
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| T |
35235254 |
gaaatcttatcttataactgatgctaagcatgtacactgtagcacataagaacaagttgtataactgcatttacaaaat |
35235332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 29286854 - 29286933
Alignment:
| Q |
120 |
gaaatcttatcttg-taactaatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaat |
198 |
Q |
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| T |
29286854 |
gaaatcttatctttataactgatgctaagcatgtacactgtagcacataggaacaagttctacaactgcatttacaaaat |
29286933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 26000001 - 26000073
Alignment:
| Q |
313 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatccacgtgcaagtgctcgaac |
385 |
Q |
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| T |
26000001 |
atgccaagaaagctactggtgtgaagagtagcaagcccattattacttcatatccacgggcaagtgctcgaac |
26000073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 25999768 - 25999814
Alignment:
| Q |
242 |
cctttgaaatcaaagt-ttttaataatgtgataacatgtgactgaaa |
287 |
Q |
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| T |
25999768 |
cctttgaaatcaaactcttttaataatgtgacaacatgtgactgaaa |
25999814 |
T |
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