View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_15 (Length: 419)
Name: NF19813_low_15
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 8e-71; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 33 - 404
Target Start/End: Original strand, 36025077 - 36025449
Alignment:
| Q |
33 |
aaatgagcttgagttaaatttttgtgctgataaagttggaacagaaccagagg--ttattacgagaaacattaaagaaattaagactatgtagattgtca |
130 |
Q |
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| T |
36025077 |
aaatgagcttgagttaaatttctttgctagtaatgttggaacaggaccggataaattattatgagaaacattgaagaaattaagactaggcagattgtca |
36025176 |
T |
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| Q |
131 |
aaggtcgttggaatttctccactaagattatttggtga---atcaagctctcaaaggattgaaatgtttcctatactttgaggaatgtggccactaagtt |
227 |
Q |
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| T |
36025177 |
aaggaaactggaatttctccactaagattattcagtgacaaatcaagctgtctaagcattgaaaggttcccaatactttgaggaatgtgaccactaaatt |
36025276 |
T |
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| Q |
228 |
ggttatgaacctagaggaatctctccaagttcc-ttaagttacctaaagaagcaggaatggttccagtaaaaatattatgatccaagataagattttgaa |
326 |
Q |
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| T |
36025277 |
ggttatga-cttagagaaatctctctaagttcccttaagttacctaaagaatcaggaatactaccggtgaaaaagttatgatccaagataagattttgaa |
36025375 |
T |
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| Q |
327 |
gcctaaaaattccattttttaagctaccatccaaggaaggagttaggaatagaaccttagagattattgtgttgaaga |
404 |
Q |
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| T |
36025376 |
gcctaaagaatccatttttcaagctaccaccc----catgagttaggaatagaacctgagagattattatgttgaaga |
36025449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 19450075 - 19449876
Alignment:
| Q |
19 |
tgaatatactccataaatgagcttgagttaaatttttgtgctgataaagttggaacagaaccagaggttattacgagaaacattaaagaaattaagacta |
118 |
Q |
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| T |
19450075 |
tgaatgtactccacaaatgagcttgagttaaatttttgtgctgataaacttggaacagaaccagagattattacgagaaacattaaagaaattaagacta |
19449976 |
T |
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| Q |
119 |
tgtagattgtcaaaggtcgttggaatttctccactaa--gattatttggtga---atcaagctctcaaaggattgaaatgtttcctatactttgaggaat |
213 |
Q |
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| T |
19449975 |
tatagattgtcaaaggtggttggaatttctccactaaaagattatttggtgacaaaagaagctctctaagcattgaaatgtttcctatactttgaggaat |
19449876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 402
Target Start/End: Complemental strand, 19449882 - 19449718
Alignment:
| Q |
241 |
gaggaatctctccaagttcc-ttaagtta-cctaaagaagcaggaatggttccagtaaaaata---ttatgatccaagataagattttgaagcctaaaaa |
335 |
Q |
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| T |
19449882 |
gaggaatccctctaagttcccttaagtaaacctaaagaagcaggaatgcttccagtaaaaaaaaaattatgatccatgataagattttgaagcctaaaga |
19449783 |
T |
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| Q |
336 |
ttccattttttaagctaccatccaaggaaggagttaggaataga--accttagagattattgtgttgaa |
402 |
Q |
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| T |
19449782 |
atccattttaaaatctaccaccc----caggagttaggaatagatcacctgagagattgttgtgttgaa |
19449718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 36005630 - 36005738
Alignment:
| Q |
185 |
attgaaatgtttcctatactttgaggaatgtggccactaagttggttatgaacctagaggaatctctccaagtt-ccttaagttacctaaagaagcagga |
283 |
Q |
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| T |
36005630 |
attgaaatgtttccaatactttgacgaatgtaaccactaaattggttatga--ctagagaaatttccctaagttcccttaagttacttaaagatgcaaga |
36005727 |
T |
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| Q |
284 |
atggttccagt |
294 |
Q |
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| T |
36005728 |
atgcttccagt |
36005738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 36019226 - 36019320
Alignment:
| Q |
186 |
ttgaaatgtttcctatactttgaggaatgtggccactaagttggttatgaacctagaggaatctctccaagttccttaagttacctaaagaagcag |
281 |
Q |
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||||||| ||||| ||||||||||||||||| ||||||| ||||||||| || |||| |||||||| | | || |||||||||||||||||||| |
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| T |
36019226 |
ttgaaatatttccaatactttgaggaatgtgaccactaaattggttatg-actaagagaaatctctctagttaccgtaagttacctaaagaagcag |
36019320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 36010579 - 36010649
Alignment:
| Q |
66 |
agttggaacagaaccagag--gttattacgagaaacattaaagaaattaagactatgtagattgtcaaagg |
134 |
Q |
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| T |
36010579 |
agttggaacaagaccagagacgttattatgagaaacattgaagcaactaagactatgtaggttgtcaaagg |
36010649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 22792166 - 22792233
Alignment:
| Q |
266 |
ttacctaaagaagcaggaatggttccagtaaaaatattatgatccaagataagattttgaagcctaaa |
333 |
Q |
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|||||||||||||||| |||| |||| || |||| |||||||||||||| ||| |||||||||||||| |
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| T |
22792166 |
ttacctaaagaagcagaaatgtttcccgtcaaaaaattatgatccaagaaaaggttttgaagcctaaa |
22792233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 22792000 - 22792051
Alignment:
| Q |
111 |
taagactatgtagattgtcaaaggtcgttggaatttctccactaagattatt |
162 |
Q |
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| T |
22792000 |
taagactatgtggattgtctaaggaagttggaatttctccactaagattatt |
22792051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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