View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_18 (Length: 406)
Name: NF19813_low_18
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 25690074 - 25689700
Alignment:
| Q |
18 |
agtagtattgcaccaaaacatcaagagttccattacatgaagagttccaaactcagaaacatttnnnnnnnnn--ctagttaaaagaactatccccatta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
25690074 |
agtagtattgcaccaaaacatcaagagttccattacatgaagagttccaaactcagaaacatttaaaaaaaaaaactagttaaaagagctatccccatta |
25689975 |
T |
|
| Q |
116 |
aaaaggccgcgatcaatactcatctctgtctgtatcatccttaactttattcctaccaactttaattttttactgtacaaacaacttctcttaacaaaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25689974 |
aaaaggccgcgatcaatactcatctctgtctgtatcatccttaactctattcctaccaactttaattttttactgtacaaacaacttctcttaacaaaga |
25689875 |
T |
|
| Q |
216 |
cctgaaacaccatatttaatcaattaacctaaaaatttctaaagcatcaagtaaacaccagtagtagttataacatttactaatgaaatccatttccatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25689874 |
cctgaaacaccatatttaatcaattaacctaaaaatttctaaagcatcaagtaaacaccagtagtagttataacatttactaatgaaatccatttccatt |
25689775 |
T |
|
| Q |
316 |
gatattgccattgccatatacatattctggtatgtaagcttgtggttttgttgctgatccattttgatatgtttt |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25689774 |
gatattgccattgccatatacatattctggtatgtaagcttgtggttttgttgctgatccattttgatatgtttt |
25689700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 52 - 332
Target Start/End: Complemental strand, 29946058 - 29945771
Alignment:
| Q |
52 |
acatgaagagttccaaactcagaaacatttnnnnnnnnnctagttaaaagaactatccccattaaaaaggccgcgatcaatactcatc---tctgtctgt |
148 |
Q |
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||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||| ||||||| |||||| ||||||||| |
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| T |
29946058 |
acatgaagagttccaaactcagaaacacttaaaaaact--tagttaaaagagctagccccattaaaaaggccgggatcaatgctcatcatctctgtctgt |
29945961 |
T |
|
| Q |
149 |
atcatccttaa--ctttattcctaccaactttaatttttt-actgtacaaacaacttctcttaacaaagacctgaaacaccatatttaatcaattaacct |
245 |
Q |
| |
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||||||||||| || |||||||||||||||| | ||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||| |
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| T |
29945960 |
atcatccttaaaactctattcctaccaactttcagtttttgactgtacaaacaacttctcttaagaaagccctcaaacaccatatttaaccaattaacct |
29945861 |
T |
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| Q |
246 |
aaaaatttctaaagcatcaagtaaacac---cagtagtagttataacatttactaatgaaatccatttccattgatattgccattgccat |
332 |
Q |
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| T |
29945860 |
tgaaatttctaacacatcaagtaaacactagtagtagtagttatatcatttagtaatgaaatccatttccattgatattgccatttccat |
29945771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 390
Target Start/End: Complemental strand, 29945775 - 29945689
Alignment:
| Q |
304 |
tccatttccattgatattgccattgccatatacatattctggtatgtaagcttgtggttttgttgctgatccattttgatatgtttt |
390 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
29945775 |
tccatttccattgatattgccattgccatatacatgttctggccaataagcatgtggctttgttgctgatccattctgatatgtttt |
29945689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 5588776 - 5588922
Alignment:
| Q |
11 |
caaaggcagtagtattgcaccaaaacatcaagagttccattacatgaagagttccaaactcagaaacatttnnnnnnnnnctagttaaaagaactatccc |
110 |
Q |
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||||| ||||| |||||||| ||||| ||| |||||||||||||||||||||||||| |||| ||||| | ||||||| |||| || ||| |
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| T |
5588776 |
caaagacagtactattgcactaaaacgtcaggagttccattacatgaagagttccaacctcaaaaacact--aaaaaaacttagttaagagaattagccc |
5588873 |
T |
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| Q |
111 |
cattaaaaaggccgcgatcaatactcatctctgtctgtatcatccttaa |
159 |
Q |
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|||||||| || || ||||||| |||||||||||||||||||||||||| |
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| T |
5588874 |
cattaaaagggtcgggatcaatgctcatctctgtctgtatcatccttaa |
5588922 |
T |
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