View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_21 (Length: 400)
Name: NF19813_low_21
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 42592786 - 42592410
Alignment:
| Q |
1 |
tgttagcactagtaggtctcaaatacaagtgtcaagaatcgacaaaattagctttgaaaaatctgcaaaataaaggaatacagatcaaattggtctcgga |
100 |
Q |
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| T |
42592786 |
tgttggcactggtaggtctcaaatacaagtgtcgagaatcgacaaaaaaagctttgaaaaatctgcaaaatgatggaatacatatcaaattggtctcgac |
42592687 |
T |
|
| Q |
101 |
ggatgacatcatggtagtgaaagaaacagcttgtgaactgggaatagaagtgccggtacacggacaccttgaaggaaaaggacttcaagatttgaatgac |
200 |
Q |
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| T |
42592686 |
ggatgacatcatggtagtgaaagaaacagcttgtgaactgggaatagaagtgccggtagacggacaccttgaaggaaaagaacttcaatacttgaatggc |
42592587 |
T |
|
| Q |
201 |
aaagctagattagttaaagtggataaagccgttgtaatgggaagtttcaatcttaaagacaagcttctcatgttgcggtgtttgcaagacaatggtcacg |
300 |
Q |
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| T |
42592586 |
aaagctagattagttaaactgggtaaagccattgcaatgggaagcttcagtcctgaagacaagcttctcatggtacgatgtttgcaagataaaggtgatg |
42592487 |
T |
|
| Q |
301 |
tggttgcattcattgaacaacaaaggttgatgactaatcatacttcagaagttctaaagctagctgatgtaggaata |
377 |
Q |
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| T |
42592486 |
tggttgcattcattgaaacacaacagttgatgactaatcatacttcagaagttctaaagatagctgatgcaggaata |
42592410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 244
Target Start/End: Original strand, 4092027 - 4092236
Alignment:
| Q |
35 |
agaatcgacaaaattagctttgaaaaatctgcaaaataaaggaatacagatcaaattggtctcggaggatgacatcatggtagtgaaagaaacagcttgt |
134 |
Q |
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| T |
4092027 |
agaatcgataaaatcagctttgcaaggtgtccaaaatactggaataaagataaaattgatctcagaggatgacatcgatttagttgaagagatagcttat |
4092126 |
T |
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| Q |
135 |
gaactgggaatagaagtgccggtacacggacaccttgaaggaaaaggacttcaagatttgaatgacaaagctagattagttaaagtggataaagccgttg |
234 |
Q |
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|||||||||||||||||||||||| ||| |||||||| ||||||| | || | |||||| |||| ||||||||| | | |||||||||||||| | | |
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| T |
4092127 |
gaactgggaatagaagtgccggtaggcggtcaccttgagggaaaagaatttaaggatttgcatgaaggagctagattcgatgaagtggataaagccatag |
4092226 |
T |
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| Q |
235 |
taatgggaag |
244 |
Q |
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||||||||| |
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| T |
4092227 |
caatgggaag |
4092236 |
T |
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