View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_23 (Length: 390)
Name: NF19813_low_23
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 92 - 283
Target Start/End: Original strand, 28535717 - 28535911
Alignment:
| Q |
92 |
actgcatgtttaaaaaatatatatttcagaagtgcatacacatcaaagaatcacatacaaatatagatagacatgt----atatactatatgattagttt |
187 |
Q |
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| T |
28535717 |
actgcatgtttaaaaaatatatatttaaatatag-atagacatcaaagaatcacatacaaatatagatagacatgtatgtatatactatatgattagttt |
28535815 |
T |
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| Q |
188 |
tattaaataaatgttaacttgaaattaatggcagggaattcaaggtaatcaactagcagcagttgaagagccaaacataaaggtaggaaggtactc |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28535816 |
tattaaataaatgttaacttgaaattaatggcagggaattcaaggtaatcaactagcagcagttgaagaaccaaacataaaggtaggaaggtactc |
28535911 |
T |
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