View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_24 (Length: 385)
Name: NF19813_low_24
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 32213498 - 32213703
Alignment:
| Q |
19 |
tctatgttcacaacaatttaacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagcaccctaacatattaggtttagttca |
118 |
Q |
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| T |
32213498 |
tctatgttcacgacaatttaacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagcaccctaacatattaggtttagttca |
32213597 |
T |
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| Q |
119 |
ttatacttaagcttacttggcagttcttgattggttgatgtgtgcatcgcgcaagctggtactcgtgtctaccaaaagtagaaacctttttgatggtgca |
218 |
Q |
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| T |
32213598 |
ttatacttaagctgacttggcagttcttgattggttgatgtgtgcatcgcgcatgctggtacgcgtgtctaccaaaagtagaaacctttttgatggtgca |
32213697 |
T |
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| Q |
219 |
atatgt |
224 |
Q |
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|||||| |
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| T |
32213698 |
atatgt |
32213703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 217 - 369
Target Start/End: Original strand, 32216311 - 32216463
Alignment:
| Q |
217 |
caatatgtgcgtcacatagagtataatgcacctcgtgcgtgagttttcgtaataagatcttgcatttcatttctttggttcttcaaggagaataaaccat |
316 |
Q |
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| T |
32216311 |
caatatgtgcgtcacatagagtataatgcacctcgtgcgtgagttttcgtaaaaagatcttgcatttcatttctttggttcttcaaggagaataaacctt |
32216410 |
T |
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| Q |
317 |
tgaattgcctttggaatttgagatagaattacctcaagtaatatggacttcat |
369 |
Q |
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| T |
32216411 |
tgaattgcctttggaatttgagatagaattacctcaagtagtctggacttcat |
32216463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 239 - 369
Target Start/End: Original strand, 32225604 - 32225734
Alignment:
| Q |
239 |
ataatgcacctcgtgcgtgagttttcgtaataagatcttgcatttcatttctttggttcttcaaggagaataaaccattgaattgcctttggaatttgag |
338 |
Q |
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| T |
32225604 |
ataatgcacctcgtgcgttagttttcgtaaaaagatcttgcatttcatttatttggttcttcaaggagaataaacttttgacttgcctttggaatttgag |
32225703 |
T |
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| Q |
339 |
atagaattacctcaagtaatatggacttcat |
369 |
Q |
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| T |
32225704 |
atagaattacctcaagtagtctggacttcat |
32225734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 19995942 - 19996004
Alignment:
| Q |
38 |
aacaaaataaagcaagaccaatctcttggcttaatgtccagtttatctaatacagcaccctaa |
100 |
Q |
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| T |
19995942 |
aacaaaataaatcaagaccaatttcttggttgaatgtcctatttatctaatatagaaccctaa |
19996004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 25228246 - 25228291
Alignment:
| Q |
26 |
tcacaacaatttaacaaaataaagcaagaccaatctcttggcttaa |
71 |
Q |
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|||| |||||||||||||||| | |||||||||| ||||||||||| |
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| T |
25228246 |
tcacgacaatttaacaaaatagatcaagaccaatgtcttggcttaa |
25228291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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