View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_27 (Length: 369)
Name: NF19813_low_27
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 13289968 - 13289628
Alignment:
| Q |
19 |
ccgtcaagtgtgagactatctccaagagatcgttgagtttaaatgtgagtgattaagtctcgcattgactatcaataagctaatgttgtatatataagag |
118 |
Q |
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| T |
13289968 |
ccgtcaagtgtaagactatctccaagaaatcgttgagtttaaatgtgagtgattaagtctcgcattgactatgaataagctaatgttgtatatataagag |
13289869 |
T |
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| Q |
119 |
aggtagcccannnnnnnattgcctaatgattttgggtggagatgtggcatctcaatatcttgttgtattggtgctcccctagacccttcaagaagtggta |
218 |
Q |
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| T |
13289868 |
aggtagcccatttttttattgcctaatgattttgggtggagatgc-------cactatcttgttgtattggtgctcccctagacccttcaagaagtggta |
13289776 |
T |
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| Q |
219 |
gcatagccttggttcggcttagtgggagaacgagagtggatccttatattgaaagtcttcttagcagtatagtcaagaagaatctttcattggtaataat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
13289775 |
gcatagccttggttcggcttagtgggagaacgagagtgaatccttatattgaaagtcttcttagcagtatagtcaagaagagtctttcattagtaataat |
13289676 |
T |
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| Q |
319 |
ggtggtgcaagtgtatgatataggagactcatacttgttagggatatt |
366 |
Q |
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| T |
13289675 |
ggcggcgcaaatgtataatataggagatttatacttgttggggatatt |
13289628 |
T |
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