View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_28 (Length: 368)
Name: NF19813_low_28
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 36088385 - 36088084
Alignment:
| Q |
17 |
aaaataagttcaccaataattaattctcacggcctaaatcaaaacctcaatttgttgagaaagcacaaacaattaatgaaacacaatgttttgttacgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36088385 |
aaaataagttcaccaataattaattctcacggcctaaatcaaaacctcaatttgttgagaaagcacaaacaattaatgaaacacaatgttttgttacgaa |
36088286 |
T |
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| Q |
117 |
gttcagtcaagtacgcctacgtcatagttttatcttacgggtagtgaatgaattaggtttacaatcttgcaactcatacataagtacccttacttcatac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36088285 |
gttcagtcaagtacgcctacgtcatagttttatcttactgatagtgaatgaattaggtttacaatcttgcaactcatacataagtacccttacttcatac |
36088186 |
T |
|
| Q |
217 |
ccaaaaattaggttcacaatttgagtcctaggggtgtatcaaattgagattttatgagactattttagctagcaacaaaaaagtcttaaatatgtaagag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36088185 |
ccaaaaattaggttcacaatttgagtcctaggggtgtatcaaattgagattttatgagactattttagctagcaacaaaaaagtcttaaatatgtaagag |
36088086 |
T |
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| Q |
317 |
cg |
318 |
Q |
| |
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|| |
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| T |
36088085 |
cg |
36088084 |
T |
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