View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19813_low_29 (Length: 366)

Name: NF19813_low_29
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19813_low_29
NF19813_low_29
[»] chr3 (11 HSPs)
chr3 (15-349)||(32606307-32606646)
chr3 (177-271)||(49682176-49682270)
chr3 (179-268)||(21813162-21813251)
chr3 (215-271)||(3973860-3973916)
chr3 (215-271)||(3995961-3996017)
chr3 (176-271)||(39144976-39145070)
chr3 (215-265)||(4009495-4009545)
chr3 (242-271)||(1996132-1996161)
chr3 (181-245)||(31294383-31294447)
chr3 (234-270)||(34285412-34285448)
chr3 (215-263)||(46547791-46547839)
[»] chr4 (12 HSPs)
chr4 (180-271)||(38949062-38949153)
chr4 (209-270)||(34469571-34469632)
chr4 (177-271)||(32893020-32893114)
chr4 (180-270)||(39804890-39804981)
chr4 (180-271)||(38380470-38380561)
chr4 (134-246)||(31655473-31655581)
chr4 (217-270)||(7388824-7388877)
chr4 (202-270)||(25115267-25115336)
chr4 (215-271)||(49011886-49011942)
chr4 (218-268)||(19652683-19652733)
chr4 (214-267)||(52650697-52650750)
chr4 (213-269)||(41956435-41956491)
[»] chr8 (16 HSPs)
chr8 (179-271)||(33285928-33286020)
chr8 (131-271)||(20142442-20142578)
chr8 (208-271)||(14237168-14237231)
chr8 (177-268)||(23984263-23984354)
chr8 (182-271)||(14855587-14855676)
chr8 (177-270)||(43238145-43238238)
chr8 (224-266)||(11078116-11078158)
chr8 (215-271)||(6904215-6904271)
chr8 (202-290)||(30674920-30675007)
chr8 (214-271)||(1876485-1876542)
chr8 (214-267)||(11533278-11533331)
chr8 (214-267)||(12002313-12002366)
chr8 (215-268)||(44042584-44042637)
chr8 (214-270)||(24457873-24457929)
chr8 (215-267)||(39691121-39691173)
chr8 (179-271)||(40464411-40464503)
[»] chr7 (10 HSPs)
chr7 (131-271)||(6771804-6771940)
chr7 (131-271)||(44319858-44319994)
chr7 (131-268)||(6775198-6775331)
chr7 (236-271)||(13040297-13040332)
chr7 (177-270)||(26210-26303)
chr7 (131-170)||(15034898-15034937)
chr7 (213-271)||(31902752-31902810)
chr7 (214-267)||(19620038-19620091)
chr7 (202-265)||(20397478-20397542)
chr7 (126-170)||(20397579-20397623)
[»] chr1 (17 HSPs)
chr1 (131-271)||(14758526-14758662)
chr1 (177-271)||(30529363-30529457)
chr1 (196-271)||(46729199-46729275)
chr1 (131-267)||(13792004-13792136)
chr1 (180-265)||(41649898-41649983)
chr1 (135-271)||(35508361-35508494)
chr1 (132-271)||(44920186-44920321)
chr1 (208-271)||(36564496-36564559)
chr1 (181-271)||(46895945-46896035)
chr1 (214-271)||(48947250-48947307)
chr1 (215-271)||(18038940-18038996)
chr1 (215-270)||(34582701-34582756)
chr1 (181-242)||(14890517-14890578)
chr1 (217-270)||(32562357-32562410)
chr1 (215-271)||(19547052-19547108)
chr1 (213-269)||(38294054-38294110)
chr1 (214-270)||(40286904-40286960)
[»] chr2 (9 HSPs)
chr2 (180-271)||(32438085-32438176)
chr2 (207-270)||(7933333-7933396)
chr2 (179-271)||(18734363-18734455)
chr2 (180-271)||(33962946-33963037)
chr2 (178-224)||(29673763-29673809)
chr2 (214-271)||(33634801-33634858)
chr2 (126-164)||(18684322-18684360)
chr2 (215-267)||(13538443-13538495)
chr2 (215-267)||(41544025-41544077)
[»] chr5 (7 HSPs)
chr5 (126-271)||(248464-248606)
chr5 (208-271)||(20125657-20125720)
chr5 (208-271)||(16980778-16980841)
chr5 (133-271)||(42877213-42877347)
chr5 (215-270)||(40944271-40944326)
chr5 (215-269)||(15206500-15206554)
chr5 (218-263)||(18988803-18988848)
[»] scaffold0633 (1 HSPs)
scaffold0633 (180-265)||(5013-5098)
[»] scaffold0027 (1 HSPs)
scaffold0027 (179-268)||(122471-122560)
[»] chr6 (3 HSPs)
chr6 (213-271)||(29988332-29988390)
chr6 (217-270)||(1479096-1479149)
chr6 (215-267)||(6586424-6586476)
[»] scaffold0182 (1 HSPs)
scaffold0182 (202-265)||(20184-20248)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 32606646 - 32606307
Alignment:
Q  15 aatatacacgaattgattattaaagaatattttgaaaagaagaagatttagagagacttattattgacatgcaagttactaaattgattgattacaataa 114  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32606646 aatatacactaattgat-attaaagaatattttgaaaagaagaagatttagagagacttattattgacatgcaagttactaaattgattgattacaataa 32606548  T
Q  115 tgtatcaacactttttagggtcttgttaacgagtgctcttaggacactcta----------taaggttttaatttcaattaaaaaattatattttgaaaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    ||||||||||||||||||||||||||    
T  32606547 tgtatcaacactttttagggtcttgttaacgagtgctcttaggacactctaggacactctataaggtttt----tcaattaaaaaattatattttgaaaa 32606452  T
Q  205 aagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtcattcgttaacatttccctactttttattggtga 304  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||    
T  32606451 aagttaacatttcaatttccgatgcattgaatgcataatttttcataaaaatttattatttaaagtcttttgttaacatttccctactttttattggtga 32606352  T
Q  305 gattgcaactaactaacctaatttcttgtaaaaccagtaaaatca 349  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||    
T  32606351 gattgcaacaaactaacctaatttatcgtaaaaccagtaaaatca 32606307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 49682176 - 49682270
Alignment:
Q  177 tttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||||||||||||||   || |||||  ||||||||||||||||||| ||| |||||||||||||||  |||||||||||||||||||||||    
T  49682176 tttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtc 49682270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 21813251 - 21813162
Alignment:
Q  179 tcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaa 268  Q
    |||||||| |||||||   ||||||||  |||||| || || |||||||||| |||||||| |||||| |||||||||||||||||||||    
T  21813251 tcaattaagaaattattcattgaaaaagtttaacactttaaattccgatgcattgaatgcataattttccataaaaatttactatttaaa 21813162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 3973860 - 3973916
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||| |||||    
T  3973860 ttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttcaagtc 3973916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 3996017 - 3995961
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||| |||||    
T  3996017 ttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttcaagtc 3995961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 39144976 - 39145070
Alignment:
Q  176 atttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||| |||||| ||||| | |||| |||||  |||||| |||||||||||||||| |||||||| ||||||  || |||||||| |||||||||||    
T  39144976 attttaattaagaaattgttttttaaaaaattttaacacttcaatttccgatgcattgaatgcataattttctat-aaaatttattatttaaagtc 39145070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 4009545 - 4009495
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactattt 265  Q
    |||||||||||||||| | ||||||||||||| || |||||||||||||||    
T  4009545 ttcaatttccgatgcattaaatgcacaattttccacaaaaatttactattt 4009495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 1996161 - 1996132
Alignment:
Q  242 atttttcataaaaatttactatttaaagtc 271  Q
    ||||||||||||||||||||||||||||||    
T  1996161 atttttcataaaaatttactatttaaagtc 1996132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 31294383 - 31294447
Alignment:
Q  181 aattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaattt 245  Q
    |||||| |||||||  |||||||||  |||||| || ||||||||||||| ||||||||| ||||    
T  31294383 aattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattgaatgcaccattt 31294447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 34285412 - 34285448
Alignment:
Q  234 aatgcacaatttttcataaaaatttactatttaaagt 270  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  34285412 aatgcacaaatttttataaaaatttactatttaaagt 34285448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 46547839 - 46547791
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactat 263  Q
    |||||||||| ||||| ||||| || ||||||||||||||| |||||||    
T  46547839 ttcaatttccaatgcattgaatacataatttttcataaaaaattactat 46547791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 38949153 - 38949062
Alignment:
Q  180 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||||||||||| | || |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  38949153 caattaaaaaattatttcttaaaaaaatttaacacttcaatttccgatgcattgaatgcacaatttttcataaaaatttactatttcaagtc 38949062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 34469632 - 34469571
Alignment:
Q  209 taacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  34469632 taacatttcaatttccgatgcattaaatgcacaatttttcataaaaatttattatttaaagt 34469571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 32893020 - 32893114
Alignment:
Q  177 tttcaattaaaaaattatattttgaaaaaagtt-aacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||||| || |||| |||| ||||||||| ||||||||||||| ||||||| |||||||||||||||  |||||| ||||||||||||||||    
T  32893020 tttcaattaagaatttat-ttttaaaaaaagtttaacatttcaattttcgatgcattgaatgcacaattttctataaaagtttactatttaaagtc 32893114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 39804981 - 39804890
Alignment:
Q  180 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcata-aaaatttactatttaaagt 270  Q
    |||||||||||||||  |||||||||| |||||| ||||||||  ||| || | |||||||||||||||||| |||||||||||||||||||    
T  39804981 caattaaaaaattattatttgaaaaaatttaacacttcaatttttgatacattaaatgcacaatttttcataaaaaatttactatttaaagt 39804890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 38380470 - 38380561
Alignment:
Q  180 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||| ||||| |  |||||||||  |||||| |||||||||||| ||| | |||||| |||||| ||||||||||||||||||||||||    
T  38380470 caattaataaatttttctttgaaaaagtttaacacttcaatttccgaagcattaaatgcataattttccataaaaatttactatttaaagtc 38380561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 31655473 - 31655581
Alignment:
Q  134 gtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactg 233  Q
    ||||||||||||||||| |||||| |||| | ||||||||      |||||||||||||||  ||| |||||  |||||| |||||| ||||||| | ||    
T  31655473 gtcttgttaacgagtgcccttagggcactttttaaggtttcc----caattaaaaaattattctttaaaaaagtttaacacttcaatatccgatgtattg 31655568  T
Q  234 aatgcacaatttt 246  Q
    |||||||||||||    
T  31655569 aatgcacaatttt 31655581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 7388824 - 7388877
Alignment:
Q  217 caatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    |||||||||||||| | ||||||||| ||| |||||||||||||||| ||||||    
T  7388824 caatttccgatgcattaaatgcacaagtttccataaaaatttactatctaaagt 7388877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 25115336 - 25115267
Alignment:
Q  202 aaaaagttaac-atttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    ||||||||||| ||| |||||||| ||||| ||||| ||||| |||| ||||||| ||||||||||||||    
T  25115336 aaaaagttaactattacaatttccaatgcagtgaatacacaactttttataaaaacttactatttaaagt 25115267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 49011942 - 49011886
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||| ||||||| | ||||||||| |||||| ||||| |||||||||||||||    
T  49011942 ttcaattttcgatgcattaaatgcacaagttttcacaaaaacttactatttaaagtc 49011886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 19652683 - 19652733
Alignment:
Q  218 aatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaa 268  Q
    ||||||| ||||| ||||||||||| |||||||||||| ||||||| ||||    
T  19652683 aatttccaatgcattgaatgcacaaattttcataaaaacttactatctaaa 19652733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 52650750 - 52650697
Alignment:
Q  214 tttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaa 267  Q
    ||||||||| | || |||||| | |||||||||||||||||| |||||||||||    
T  52650750 tttcaattttcaattcactgattacacaatttttcataaaaaattactatttaa 52650697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 41956491 - 41956435
Alignment:
Q  213 atttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaag 269  Q
    |||||||||| | | ||| ||| | ||||||||||||||||||||||||||| ||||    
T  41956491 atttcaattttcaacgcattgattacacaatttttcataaaaatttactattaaaag 41956435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 33286020 - 33285928
Alignment:
Q  179 tcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||| ||||| | | ||| ||||||||||||||||||||||||||||||||||    
T  33286020 tcaattaagaaattattttttgaaaaaatttaacatttcaattttcgatgtattaaatacacaatttttcataaaaatttactatttaaagtc 33285928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 20142578 - 20142442
Alignment:
Q  131 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 230  Q
    |||||||||||||||||||  || |||||||||| ||||||    ||||||||||| ||||||| |||| |||||  |||||| || ||||| |||||||    
T  20142578 agggtcttgttaacgagtgtcctaaggacactctttaaggt----atttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgca 20142483  T
Q  231 ctgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
     | ||||||||||||  |||||||||||| |||||||||||    
T  20142482 ttaaatgcacaatttcccataaaaatttattatttaaagtc 20142442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 14237168 - 14237231
Alignment:
Q  208 ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  14237168 ttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttaaagtc 14237231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 23984263 - 23984354
Alignment:
Q  177 tttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaa 268  Q
    |||||||||| |||||||  ||| |||||  ||||||  |||||||  ||| ||||||| ||||||||||||||||||||||||||||||||    
T  23984263 tttcaattaagaaattattctttaaaaaagtttaacacctcaatttttgatacactgaaagcacaatttttcataaaaatttactatttaaa 23984354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 14855676 - 14855587
Alignment:
Q  182 attaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||||||||  |||||||||  |||||| |||||||| |||||||   |||| ||| ||||||||||||||||| |||||||||||    
T  14855676 attaaaaaattattctttgaaaaagtttaacacttcaatttacgatgcatcaaatggacactttttcataaaaatttattatttaaagtc 14855587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 43238238 - 43238145
Alignment:
Q  177 tttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    |||||||||| |||||||   || |||||  |||||| |||||||| ||||||| | |||| | |||||| |||||||||||||||||||||||    
T  43238238 tttcaattaagaaattattccttaaaaaagtttaacacttcaattttcgatgcattaaatgtagaattttccataaaaatttactatttaaagt 43238145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 11078116 - 11078158
Alignment:
Q  224 cgatgcactgaatgcacaatttttcataaaaatttactattta 266  Q
    ||||||| |||||||| ||||||||||||||||||||||||||    
T  11078116 cgatgcattgaatgcataatttttcataaaaatttactattta 11078158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 6904215 - 6904271
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||||||||||| |||| |||||| ||| |||||||| ||||||| |||||||    
T  6904215 ttcaatttccgatgcattgaacgcacaagtttccataaaaaattactatctaaagtc 6904271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 30675007 - 30674920
Alignment:
Q  202 aaaaagttaa-catttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtcattcgttaacatttcccta 290  Q
    |||||||||| ||||||||||| | ||||| ||||||||||  ||| |||||||  ||||||||| || ||  |||||||||||||||||    
T  30675007 aaaaagttaaacatttcaatttacaatgcattgaatgcacatatttccataaaatattactattttaaatc--tcgttaacatttcccta 30674920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 1876542 - 1876485
Alignment:
Q  214 tttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||||||| ||||||||| | |||||  ||||||||||| |||| ||||||||||    
T  1876542 tttcaatttccaatgcactgattacacaaactttcataaaaaattaccatttaaagtc 1876485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 11533278 - 11533331
Alignment:
Q  214 tttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaa 267  Q
    ||||||||||| |||||||||| ||||||  ||||||||||| |||| ||||||    
T  11533278 tttcaatttccaatgcactgaaggcacaaactttcataaaaaattaccatttaa 11533331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 12002313 - 12002366
Alignment:
Q  214 tttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaa 267  Q
    ||||||||||| ||||||||| | ||||| |||| ||||||| |||||||||||    
T  12002313 tttcaatttccaatgcactgattacacaaatttttataaaaagttactatttaa 12002366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 44042584 - 44042637
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaa 268  Q
    |||||||||| ||||| ||||||||||| |||  ||||||| ||||||||||||    
T  44042584 ttcaatttccaatgcattgaatgcacaaatttctataaaaacttactatttaaa 44042637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 24457873 - 24457929
Alignment:
Q  214 tttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    ||||||||||  ||||| | || |||||| |||||||||||| ||||||||||||||    
T  24457873 tttcaatttcaaatgcattaaaagcacaagttttcataaaaacttactatttaaagt 24457929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 39691173 - 39691121
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaa 267  Q
    |||||||| | ||||| ||||| ||||| |||||||||||| |||||||||||    
T  39691173 ttcaattttcaatgcattgaatacacaaattttcataaaaaattactatttaa 39691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 40464503 - 40464411
Alignment:
Q  179 tcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||||||| |||   |||||||   |||| |||||||||| |||||   ||||||||||| ||  ||||||||||||||||| ||||||    
T  40464503 tcaattaaaaaactattcattgaaaatgtttaatatttcaattttcgatgttttgaatgcacaagttaccataaaaatttactattcaaagtc 40464411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 6771804 - 6771940
Alignment:
Q  131 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 230  Q
    |||||||| ||||||||||  |||| |||||||| ||||||||     |||||||| |||||||  |||||||||| | | ||||||||||||||||  |    
T  6771804 agggtcttcttaacgagtgtccttaagacactctttaaggtttc----tcaattaagaaattattctttgaaaaaactcaccatttcaatttccgatata 6771899  T
Q  231 ctgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
     ||||||||||||||| ||||||||||||||||||||||||    
T  6771900 ttgaatgcacaattttccataaaaatttactatttaaagtc 6771940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 44319994 - 44319858
Alignment:
Q  131 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 230  Q
    |||||||||||||||||||  || |||||||||| ||||||    ||||||||||| ||||||| |||| |||||  |||||| || ||||| |||||||    
T  44319994 agggtcttgttaacgagtgtcctaaggacactctttaaggt----atttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgca 44319899  T
Q  231 ctgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
     | ||||||||||||  |||||||||||| |||||||||||    
T  44319898 ttaaatgcacaatttcccataaaaatttattatttaaagtc 44319858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 6775198 - 6775331
Alignment:
Q  131 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 230  Q
    ||||||||||||| |||||  |||||| |||||| ||||||||     |||||||| |||||||  |||||||||  | |  |||| |||||||||||||    
T  6775198 agggtcttgttaaggagtgtccttagggcactctttaaggtttc----tcaattaataaattattctttgaaaaatctcactatttgaatttccgatgca 6775293  T
Q  231 ctgaatgcacaatttttcataaaaatttactatttaaa 268  Q
     ||||||||||||||| |||||| ||||||||||||||    
T  6775294 ttgaatgcacaattttccataaatatttactatttaaa 6775331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 13040332 - 13040297
Alignment:
Q  236 tgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  13040332 tgcacaatttttcataaaaatttactatttaaagtc 13040297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 26210 - 26303
Alignment:
Q  177 tttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    |||||||||| |||||||  |||| ||||  |||||| || ||||| ||||||| | |||| |||||||  |||||||||||| ||||||||||    
T  26210 tttcaattaagaaattattctttgcaaaagtttaacactttaattttcgatgcattaaatgtacaatttcccataaaaatttattatttaaagt 26303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 15034937 - 15034898
Alignment:
Q  131 agggtcttgttaacgagtgctcttaggacactctataagg 170  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  15034937 agggtcttgttaacgagtgcccttaggacactctttaagg 15034898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 31902810 - 31902752
Alignment:
Q  213 atttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||||| | || || ||| | ||||||||| ||||||||||||||||||||||||    
T  31902810 atttcaattttcaatacattgactacacaattttccataaaaatttactatttaaagtc 31902752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 19620038 - 19620091
Alignment:
Q  214 tttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaa 267  Q
    ||||||||||| ||||||||| |  |||| |||||||||||| |||||||||||    
T  19620038 tttcaatttccaatgcactgattatacaacttttcataaaaagttactatttaa 19620091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 20397542 - 20397478
Alignment:
Q  202 aaaaagttaa-catttcaatttccgatgcactgaatgcacaatttttcataaaaatttactattt 265  Q
    |||||||||| ||||||||||| | ||||| ||||||||||  |||||||||||  |||||||||    
T  20397542 aaaaagttaaacatttcaattttcaatgcattgaatgcacacattttcataaaatattactattt 20397478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 20397623 - 20397579
Alignment:
Q  126 tttttagggtcttgttaacgagtgctcttaggacactctataagg 170  Q
    |||| ||||| |||||||||||||||||||||| ||||| |||||    
T  20397623 ttttaagggttttgttaacgagtgctcttaggatactctttaagg 20397579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 14758526 - 14758662
Alignment:
Q  131 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 230  Q
    |||||||||||||||||||  || ||| |||||| ||| |||||     ||||||| |||||||   || |||||  ||||||||||||||| |||||||    
T  14758526 agggtcttgttaacgagtgtcctaagggcactctttaaagttttc----caattaagaaattattccttaaaaaagtttaacatttcaattttcgatgca 14758621  T
Q  231 ctgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  14758622 ttgaatgcacaatttttcataaaaatttactatttaaagtc 14758662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 30529363 - 30529457
Alignment:
Q  177 tttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||||| |||||||  |||||||||| |||||| ||||||||| |||||| | ||||||||||||| ||||||||||||||||||||||||    
T  30529363 tttcaattaagaaattattctttgaaaaaatttaacacttcaatttctgatgcattaaatgcacaattttccataaaaatttactatttaaagtc 30529457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 46729199 - 46729275
Alignment:
Q  196 ttttgaaaaaag-ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||| ||||||| |||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  46729199 tttttaaaaaagattaacacttcaaattccgatgcattgaatgcacaattttccataaaaatttactatttaaagtc 46729275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 267
Target Start/End: Complemental strand, 13792136 - 13792004
Alignment:
Q  131 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 230  Q
    ||||||||| |||||||||  |||| |||||||| |||||||||    | |||||||||||||| |||| |||||  |||||| |||||||   ||||||    
T  13792136 agggtcttgctaacgagtgtccttaagacactctttaaggtttt----ttaattaaaaaattatttttttaaaaagtttaacacttcaattattgatgca 13792041  T
Q  231 ctgaatgcacaatttttcataaaaatttactatttaa 267  Q
     | |||||||||||| | |||||||||||||||||||    
T  13792040 tttaatgcacaatttcttataaaaatttactatttaa 13792004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 41649898 - 41649983
Alignment:
Q  180 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactattt 265  Q
    |||||||||||||||   || |||||  ||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||    
T  41649898 caattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttactattt 41649983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 271
Target Start/End: Original strand, 35508361 - 35508494
Alignment:
Q  135 tcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactga 234  Q
    |||||||||||||||| || | |||||||| || |||||     |||||||| |||||||  |||||||||| |||||| |||||||||| ||||| | |    
T  35508361 tcttgttaacgagtgccctgatgacactctttatggtttc----tcaattaagaaattattctttgaaaaaatttaacacttcaatttccaatgcattta 35508456  T
Q  235 a-tgcacaatttttcataaaaatttactatttaaagtc 271  Q
    | || ||||||| ||||||||||||| |||||||||||    
T  35508457 aatgtacaatttctcataaaaatttattatttaaagtc 35508494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 271
Target Start/End: Original strand, 44920186 - 44920321
Alignment:
Q  132 gggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcac 231  Q
    |||||||||||||||||| | | ||| || ||| ||||||||     |||||||| |||||||   || |||||  |||||| ||||||||  ||||||     
T  44920186 gggtcttgttaacgagtgttttaagggcattctttaaggtttc----tcaattaagaaattattcattaaaaaagtttaacacttcaatttatgatgcat 44920281  T
Q  232 tgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  44920282 tgaatgcacaattttccataaaaatttactatttcaagtc 44920321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 36564559 - 36564496
Alignment:
Q  208 ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||| |||||||||  | ||| ||||||||||||||||||||||| ||||||||||||||||    
T  36564559 ttaacacttcaatttctaaagcattgaatgcacaatttttcataaaattttactatttaaagtc 36564496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 46895945 - 46896035
Alignment:
Q  181 aattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||| ||||||| | ||||||||   ||| |||||||||||||||||| |||||||| || |||  ||||||| ||||||| |||||||    
T  46895945 aattaagaaattatttattgaaaaagtctaatatttcaatttccgatgcattgaatgcataaatttctataaaaacttactatctaaagtc 46896035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 48947250 - 48947307
Alignment:
Q  214 tttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||||||| ||||||||| | ||||| |||||||||||| |||| ||||||||||    
T  48947250 tttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaaagtc 48947307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 18038940 - 18038996
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||||||||||| ||||| ||||| |||||||||||| ||| ||| |||||||    
T  18038940 ttcaatttccgatgcattgaatacacaaattttcataaaaaattattatctaaagtc 18038996  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 34582701 - 34582756
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    ||||||||| |||||| |||||||| || |||||||||||| ||||||| ||||||    
T  34582701 ttcaatttctgatgcattgaatgcataagttttcataaaaacttactatctaaagt 34582756  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 14890578 - 14890517
Alignment:
Q  181 aattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaa 242  Q
    ||||||||||||||   ||||||||| |||| | ||||||||||||| || |||||||||||    
T  14890578 aattaaaaaattattaattgaaaaaacttaatacttcaatttccgatacattgaatgcacaa 14890517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 32562410 - 32562357
Alignment:
Q  217 caatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    |||||| | ||||| ||||| |||||||||| ||||||| ||||||||||||||    
T  32562410 caattttcaatgcagtgaatacacaattttttataaaaacttactatttaaagt 32562357  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 19547108 - 19547052
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||| |||||||| ||||||||||| |||  ||||||| ||||||| |||||||    
T  19547108 ttcaattcccgatgcattgaatgcacaagtttctataaaaacttactatataaagtc 19547052  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 38294054 - 38294110
Alignment:
Q  213 atttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaag 269  Q
    |||| ||||||| ||||| ||||||||||| |||  ||||||| |||||||||||||    
T  38294054 attttaatttccaatgcattgaatgcacaagtttctataaaaacttactatttaaag 38294110  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 40286904 - 40286960
Alignment:
Q  214 tttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    ||||||||||| ||||||||| | |||||  ||| ||||||| ||||||||||||||    
T  40286904 tttcaatttccaatgcactgagtacacaaacttttataaaaagttactatttaaagt 40286960  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 32438176 - 32438085
Alignment:
Q  180 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||||||||||  ||||||||   |||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  32438176 caattaaaaaattattatttgaaaaggtttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttaaagtc 32438085  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 7933333 - 7933396
Alignment:
Q  207 gttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  7933333 gttaacacttcaatttccgatgcattgaatgcataatttttcataaaaatttactatttaaagt 7933396  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 18734363 - 18734455
Alignment:
Q  179 tcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||||| |||||||   || |||||  |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| |||||    
T  18734363 tcaattaagaaattattccttaaaaaagtttaacacttcaatttccgatacattgaatgcacaatttttcataaaaatttactatttcaagtc 18734455  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 33963037 - 33962946
Alignment:
Q  180 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||| |||||||  ||| |||||  |||||| |||||||| | ||||| |||||||||||||||||||||||||||| |||||||||||    
T  33963037 caattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttattatttaaagtc 33962946  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 29673763 - 29673809
Alignment:
Q  178 ttcaattaaaaaattatattttgaaaaaagttaacatttcaatttcc 224  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  29673763 ttcaattaaaaaattattttttgaaaaaacttaatatttcaatttcc 29673809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 33634858 - 33634801
Alignment:
Q  214 tttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||||||| ||| ||||| ||||||| |||| ||||||| |||||||||||||||    
T  33634858 tttcaatttccaatgtactgattgcacaactttttataaaaagttactatttaaagtc 33634801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 18684322 - 18684360
Alignment:
Q  126 tttttagggtcttgttaacgagtgctcttaggacactct 164  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  18684322 tttttagggtcttgttaacgagtgctctcgggacactct 18684360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 13538443 - 13538495
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaa 267  Q
    |||||||||| ||||| ||||| || || |||||||||||| |||||||||||    
T  13538443 ttcaatttccaatgcattgaatacataacttttcataaaaagttactatttaa 13538495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 41544025 - 41544077
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaa 267  Q
    |||||||||| ||||| ||||| || ||||||||||||||| ||| |||||||    
T  41544025 ttcaatttccaatgcaatgaatacataatttttcataaaaaattattatttaa 41544077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 271
Target Start/End: Complemental strand, 248606 - 248464
Alignment:
Q  126 tttttagggtcttgttaacgagtgctctta-ggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagtt-aacatttcaatttc 223  Q
    |||| ||||||||||||||||||| ||||| || |||||| ||||||||     |||||||| ||||||| | || ||||||||| |||| |||||||||    
T  248606 ttttaagggtcttgttaacgagtg-tcttaagggcactctttaaggtttc----tcaattaagaaattatttctttaaaaaagtttaacacttcaatttc 248512  T
Q  224 cgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||| | ||||||||||||||| |||||||||||||||||| |||||    
T  248511 cgatgtattgaatgcacaattttccataaaaatttactatttcaagtc 248464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 20125720 - 20125657
Alignment:
Q  208 ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20125720 ttaacacttcaattttcgatgcactaaatgcacaatttttcataaaaatttactatttaaagtc 20125657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 16980778 - 16980841
Alignment:
Q  208 ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    |||||| ||||||||||||| || |||||| | |||||||||||||||| ||||||||||||||    
T  16980778 ttaacacttcaatttccgatacattgaatgtataatttttcataaaaatgtactatttaaagtc 16980841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 271
Target Start/End: Original strand, 42877213 - 42877347
Alignment:
Q  133 ggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagtt-aacatttcaatttccgatgcac 231  Q
    ||||||| ||||||||| ||| |||||||||| ||| ||||     |||||| | ||||||| |  ||||||||||| || |||||||||| | ||| |     
T  42877213 ggtcttgctaacgagtgttctaaggacactctttaaagtttc----tcaattgagaaattat-tcatgaaaaaagtttaaaatttcaattttcaatgtat 42877307  T
Q  232 tgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  42877308 tgaatacacaattttccataaaaatttactatttaaagtc 42877347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 40944326 - 40944271
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    |||||||| ||||||| |||||| |||| ||| |||||||||||||||| ||||||    
T  40944326 ttcaattttcgatgcattgaatgtacaaatttccataaaaatttactatctaaagt 40944271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 15206554 - 15206500
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaag 269  Q
    |||||||| |||| || ||||||||||| |||||||||||| ||| |||||||||    
T  15206554 ttcaattttcgattcattgaatgcacaaattttcataaaaaattattatttaaag 15206500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 18988803 - 18988848
Alignment:
Q  218 aatttccgatgcactgaatgcacaatttttcataaaaatttactat 263  Q
    ||||||| ||||| |||||||| || ||||||||||||||||||||    
T  18988803 aatttccaatgcattgaatgcataagttttcataaaaatttactat 18988848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 5098 - 5013
Alignment:
Q  180 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactattt 265  Q
    |||||||||||||||   || |||||  ||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||    
T  5098 caattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttactattt 5013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 122560 - 122471
Alignment:
Q  179 tcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaa 268  Q
    |||||||| |||||||  |||||||||  |||||| || ||||||||||||| | ||||||||||||| |||||||| |||||| |||||    
T  122560 tcaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattaaatgcacaattttccataaaaaattactacttaaa 122471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 29988390 - 29988332
Alignment:
Q  213 atttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagtc 271  Q
    ||||||||||  |||| | ||||||  ||||||| ||||||||||||||||||||||||    
T  29988390 atttcaatttttgatgtattgaatgttcaattttccataaaaatttactatttaaagtc 29988332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 1479149 - 1479096
Alignment:
Q  217 caatttccgatgcactgaatgcacaatttttcataaaaatttactatttaaagt 270  Q
    |||||| | ||||| ||||| ||||||||| ||||||||||||| |||||||||    
T  1479149 caattttcaatgcattgaatacacaattttacataaaaatttaccatttaaagt 1479096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 6586476 - 6586424
Alignment:
Q  215 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatttaa 267  Q
    |||||||||||||||| ||||  || || |||||||||||| |||||||||||    
T  6586476 ttcaatttccgatgcattgaaaacataaattttcataaaaagttactatttaa 6586424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 20184 - 20248
Alignment:
Q  202 aaaaagttaa-catttcaatttccgatgcactgaatgcacaatttttcataaaaatttactattt 265  Q
    |||||||||| ||||||||||||  ||||| ||||||||||  |||||||||||  |||||||||    
T  20184 aaaaagttaaacatttcaatttcaaatgcattgaatgcacacattttcataaaatattactattt 20248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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