View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_3 (Length: 667)
Name: NF19813_low_3
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 64 - 651
Target Start/End: Original strand, 39325345 - 39325933
Alignment:
| Q |
64 |
tgagtgttatttgtcattctcatacagtacgcctgtttgccaggttaattggagtgccattttccaattaagtgactaggtttccaaagctcgttacaaa |
163 |
Q |
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| T |
39325345 |
tgagtgttatttgtcattctcatacagtacgcctgtttgccaggttaattgaagtgccattttccaattaagtgactaggtttccaaagctcgttacaaa |
39325444 |
T |
|
| Q |
164 |
ttcaacatttcaaatccccaagttttactgcaacctctcgtatgagttctatagaggttgagatatgatctaaaaatgtgtttataaataatgtatgttc |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| |
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| T |
39325445 |
ttcaacatttcaaatccccaagttttactgcaacctctcgtatgagttctatagaggttgagatatgatctaaaaatatgtttataaatagtgtttgttc |
39325544 |
T |
|
| Q |
264 |
tcgcctcaagagccgagttatgatctaaaaacgtgtttataaatagtggttcttttcacaacaatgactagtttttcaagtgttgagttagcctcaattc |
363 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39325545 |
tcgcctcaagagccgatttatgatctaaaaacgtgtttataaatagtggttgttctcacaacaatgactagtttttcaagtgttgagttagcctcaattc |
39325644 |
T |
|
| Q |
364 |
aaattctaaaataatataaaagttgttcagtcacttgttgaatcactcaagttacgcttcatttatcatatcttgaccatatgaaagcatgttaagtgta |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39325645 |
aaattctaaaataatataaaagttgttcagtcacttgttgaatcactcaagttacgcttcatttatcatatcttaaccatatgaaagcatgttaagtgta |
39325744 |
T |
|
| Q |
464 |
-cgtattaaattagatgagatatggtctaaaaacgtttttataattgtgataggctagctcatccaaattataagagcctttttctactacatttgacta |
562 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39325745 |
tcgtattaaattagatgagatatggtctaaaaacgtttttataattgtgataggctagctcatccaaattataagagcctttttctactacatttgacta |
39325844 |
T |
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| Q |
563 |
ttatgaaagaaaaaacatgacattttgatgtccctaacctaataaagcaagatgtatatgcttcatatatgtatagcaacagttctaag |
651 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39325845 |
ttatgaaagaaaaaacatgacattttgatgtccctaacctaataaagcaagatgtatatgcttcatatatgtatagcaacagttctaag |
39325933 |
T |
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