View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_34 (Length: 314)
Name: NF19813_low_34
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 15489750 - 15489469
Alignment:
| Q |
16 |
gtttttctacaatctgtattttcttccgcaaattcttattaaaattcctctcttttgtgctctatctgcaatttttcatgataatgatgtttctatcgca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15489750 |
gtttttctacaatctgtattttcttccgcaaattcttattaaatttcctcgcttt-gtgctctatcttcaatttttcatgataatgatgtttctatcgcg |
15489652 |
T |
|
| Q |
116 |
ctcccccattcagcttttcatctcatactaatattgcatacaaacataactacattcaaagatgctcaacacatgaaatttagatcgttgataaatagga |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15489651 |
ctcccccattcagcttttcatctcatagtaatattgcatacaaacataactacattcaaagatgctcaacacatgaaatttagatcgttgataaatagga |
15489552 |
T |
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| Q |
216 |
agcacaacaagcactattttaagatcaacagaaatcagtattgatctaaatgaagcatgaggcaatgagaaatacgataattc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15489551 |
agcacaacaagcactattttaagatcaacagaaatcagttttgatctaaatgaagcatgaggcaatgagaaatacaataattc |
15489469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 15557791 - 15557510
Alignment:
| Q |
16 |
gtttttctacaatctgtattttcttccgcaaattcttattaaaattcctctcttttgtgctctatctgcaatttttcatgataatgatgtttctatcgca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15557791 |
gtttttctacaatctgtattttcttccgcaaattcttattaaatttcctcgcttt-gtgctctatcttcaatttttcatgataatgatgtttctatcgcg |
15557693 |
T |
|
| Q |
116 |
ctcccccattcagcttttcatctcatactaatattgcatacaaacataactacattcaaagatgctcaacacatgaaatttagatcgttgataaatagga |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15557692 |
ctcccccattcagcttttcatctcatagtaatattgcatacaaacataactacattcaaagatgctcaacacatgaaatttagatcgttgataaatagga |
15557593 |
T |
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| Q |
216 |
agcacaacaagcactattttaagatcaacagaaatcagtattgatctaaatgaagcatgaggcaatgagaaatacgataattc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15557592 |
agcacaacaagcactattttaagatcaacagaaatcagttttgatctaaatgaagcatgaggcaatgagaaatacaataattc |
15557510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 15431356 - 15431074
Alignment:
| Q |
16 |
gtttttctacaatctgtattttcttccgcaaattcttattaaaattcctctcttttgtgctctatctgcaatttttcatgataatgatgtttctatcgca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15431356 |
gtttttctacaatctgtattttcttccgcaaattcttaagaaatttcctctcttttgtgctctatctgcaatttttcatgataatgatgtttctatcgcg |
15431257 |
T |
|
| Q |
116 |
ctcccccattcagcttttcatctcatactaatattgcatacaaacataactacattcaaagatgctcaacacatgaaatttagatcgttgataaatagga |
215 |
Q |
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|||||||||||||||||| |||||||| ||| || |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15431256 |
ctcccccattcagcttttaatctcatagtaactttttgtacaaacataactacatttatagatgctcaacacatgaaatttagatcgttgataaatagga |
15431157 |
T |
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| Q |
216 |
agcacaacaagcactattttaagatcaacagaaatcagtattgatctaaatgaagcatgaggcaatgagaaatacgataattc |
298 |
Q |
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| T |
15431156 |
agcacaacaagcactattttaagatcaacagaaatcagtattgatctaaatgaagcatgatgcaatgagaaatacaataattc |
15431074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 67 - 298
Target Start/End: Complemental strand, 15450765 - 15450534
Alignment:
| Q |
67 |
cttttgtgctctatctgcaatttttcatgataatgatgtttctatcgcactcccccattcagcttttcatctcatactaatattgcatacaaacataact |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15450765 |
cttttgtgctctatctgcaatttttcatgataatgatgtttctatcgcgctcccctattcagcttttcatctcatagtaatattgcatacaaacataact |
15450666 |
T |
|
| Q |
167 |
acattcaaagatgctcaacacatgaaatttagatcgttgataaataggaagcacaacaagcactattttaagatcaacagaaatcagtattgatctaaat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15450665 |
acattcaaagatgctcaacacatgaaatttagatcgttgataaataggaagcacaacaagcactattttaagatcaacagaaatcagcattgatctaaat |
15450566 |
T |
|
| Q |
267 |
gaagcatgaggcaatgagaaatacgataattc |
298 |
Q |
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|||||||||||||||||||||||| ||||||| |
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| T |
15450565 |
gaagcatgaggcaatgagaaatacaataattc |
15450534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 107 - 298
Target Start/End: Complemental strand, 16944270 - 16944098
Alignment:
| Q |
107 |
tctatcgcactcccccattcagcttttcatctcatactaatattgcatacaaacataactacattcaaagatgctcaacacatgaaatttagatcgttga |
206 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16944270 |
tctatcgtgctcccccattcagcttttcatctcatagtaatattgcatacaaacataactacattcaaagatgctcaacacatgaaatttagatcg---- |
16944175 |
T |
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| Q |
207 |
taaataggaagcacaacaagcactattttaagatcaacagaaatcagtattgatctaaatgaagcatgaggcaatgagaaatacgataattc |
298 |
Q |
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||| || || ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
16944174 |
------------acagaaatcattattt---gatcaacagaaatcattattgatctaaatgaagtatgaggcaatgagaaatacaataattc |
16944098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 16944330 - 16944265
Alignment:
| Q |
16 |
gtttttctacaatctgtattttcttccgcaaattcttattaaaattcctctcttttgtgctctatc |
81 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
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| T |
16944330 |
gtttttctaaaatctgtattttcttctgcaaattcttattaaatttcctcgcttttgtgctctatc |
16944265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 15450862 - 15450827
Alignment:
| Q |
16 |
gtttttctacaatctgtattttcttccgcaaattct |
51 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
15450862 |
gtttttctacaatctgtattttcttccgcaaattct |
15450827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 15431453 - 15431419
Alignment:
| Q |
16 |
gtttttctacaatctgtattttcttccgcaaattc |
50 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
15431453 |
gtttttctacaatctgtattttcttccgcaaattc |
15431419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 15450825 - 15450790
Alignment:
| Q |
92 |
catgataatgatgtttctatcgcactcccccattca |
127 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |
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| T |
15450825 |
catgataatgatgtttctatcgcgctcccccattca |
15450790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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