View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_38 (Length: 296)
Name: NF19813_low_38
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 28535755 - 28535911
Alignment:
| Q |
37 |
acatcaaagaatcacatacaaatatagatagacatgt----atatactatatgattagttttattaaataaatgttaacttgaaattaatggcagggaat |
132 |
Q |
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| T |
28535755 |
acatcaaagaatcacatacaaatatagatagacatgtatgtatatactatatgattagttttattaaataaatgttaacttgaaattaatggcagggaat |
28535854 |
T |
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| Q |
133 |
tcaaggtaatcaactagcagcagttgaagagccaaacataaaggtaggaaggtactc |
189 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28535855 |
tcaaggtaatcaactagcagcagttgaagaaccaaacataaaggtaggaaggtactc |
28535911 |
T |
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