View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_41 (Length: 282)
Name: NF19813_low_41
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 53616512 - 53616764
Alignment:
| Q |
18 |
ttttctgtcaacggcaacaatggctcctagtccgaaatctgaagccgtcgtttaccttcatggtaacctcgatttgaaaatcgttgaagctcgttatcta |
117 |
Q |
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| T |
53616512 |
ttttctgtcaacggcaacaatggctcctagtccgaaatctgaagccgtcgtttaccttcatggtaacctcgatttgaaaatcgttgaagctcgttatcta |
53616611 |
T |
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| Q |
118 |
ccaaacatggatatgctttcagagcgttttagaagattcttctccgctttcaactcatgcagcgctaacatcaccactaaaggaaaaaaccatcttacac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53616612 |
ccaaacatggatatgctttcagagcgttttagaagattcttctccgctttcaactcatgcagcgctaacatcaccactaaaggaaaaaaccatcttacac |
53616711 |
T |
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| Q |
218 |
gtcatcgtcaccataaaatcatcactagcgatccttacgttaccgtttgtctc |
270 |
Q |
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| T |
53616712 |
gtcatcgtcaccataaaatcatcactagcgatccttacgttaccgtttgtctc |
53616764 |
T |
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