View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_42 (Length: 279)
Name: NF19813_low_42
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 3428251 - 3427989
Alignment:
| Q |
10 |
ataatactatttacgtgttcggacttctatgtgggtagaattttcattattttgatttgaattttgg-------gtgccaatagtagtactcaaaatgca |
102 |
Q |
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| T |
3428251 |
ataatactatttacgtgttcggacttctatgtgggtagaattttcattattttgatttgaattttggactttgggtgccaatagtagtactcaaaatgga |
3428152 |
T |
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| Q |
103 |
tacggtaatgttaaaacattcaaaccatatatgcattagcaaacaacaaattccgattccaattcgctaaatgtcaaaattaacgtttaagtccacgtta |
202 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3428151 |
tacggtaatgttaaaacattcaaaccatat--gcattagcaaacaacaaattccgattccaattcgctaaatgtcaaaattaacgtttaagtccacgtta |
3428054 |
T |
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| Q |
203 |
ctaatttcttttagggagcattgccacacacgtacacattaagtgtaagaaatatcttcattact |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3428053 |
ctaatttcttttagggagcattgccacacacgtacacattaagtgtaagaaatatcttcattact |
3427989 |
T |
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