View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_48 (Length: 250)
Name: NF19813_low_48
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 39975719 - 39975945
Alignment:
| Q |
16 |
taggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaa |
115 |
Q |
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| T |
39975719 |
taggatccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaa |
39975818 |
T |
|
| Q |
116 |
caatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttcacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975819 |
caatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttcacca |
39975918 |
T |
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| Q |
216 |
tcttgttttctgtctcttgttcatctc |
242 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
39975919 |
tcttgttttctgtctcttgttaatctc |
39975945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 25552899 - 25552961
Alignment:
| Q |
107 |
ctcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggaca |
169 |
Q |
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| T |
25552899 |
ctcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
25552961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 16147502 - 16147717
Alignment:
| Q |
21 |
tccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaatg |
120 |
Q |
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| T |
16147502 |
tccaaacattttaatccactagctgttgtaccataaaacatactcacattaacattcatagccactggaacaatctcatcagcaagttcagcaaaaagtg |
16147601 |
T |
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| Q |
121 |
aactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttcaccatcttg |
220 |
Q |
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||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| | |||||| |
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| T |
16147602 |
aactaaaccttaataaataaggttccctacaagttgttccttcaggacaaacaactaaatcaccttcacttaacaacctttgcattgtttccctatcttg |
16147701 |
T |
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| Q |
221 |
ttttctgtctcttgtt |
236 |
Q |
| |
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|| ||| || |||||| |
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| T |
16147702 |
ttctctatcccttgtt |
16147717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 16195433 - 16195219
Alignment:
| Q |
21 |
tccaaacacttcaatccgcttgctgtggtcccataaaacatgctgacatgagtattcattgccacaggcactatctcattagccaactcagcaaacaatg |
120 |
Q |
| |
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|||||||| || ||||| || ||||| || ||||||||||| || |||| | |||||| ||||| || || ||||||| ||| | |||||||| | || |
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| T |
16195433 |
tccaaacattttaatccactagctgttgtaccataaaacatactcacattatcattcatagccactggaacaatctcatcagcaatttcagcaaaaagtg |
16195334 |
T |
|
| Q |
121 |
aactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattgtttcaccatcttg |
220 |
Q |
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||||||||||||| ||||| ||||| ||||| |||||||||||||| || ||||||||||||||||| || || ||| ||||||||||||| | |||||| |
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| T |
16195333 |
aactaaaccttaataaataaggttccctacaagttgttccttcagggcacacaactaaatcaccttccctaagcaacctttgcattgtttccctatcttg |
16195234 |
T |
|
| Q |
221 |
ttttctgtctcttgt |
235 |
Q |
| |
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|| |||||||||||| |
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| T |
16195233 |
ttctctgtctcttgt |
16195219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 38792285 - 38792363
Alignment:
| Q |
108 |
tcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcacctt |
186 |
Q |
| |
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|||| |||||| || ||||||||||| ||||| ||||||||||| || || ||||| ||||| ||||||| ||| |||| |
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| T |
38792285 |
tcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggacacacaactacatcccctt |
38792363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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