View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19813_low_5 (Length: 590)

Name: NF19813_low_5
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19813_low_5
NF19813_low_5
[»] chr6 (11 HSPs)
chr6 (17-307)||(1096626-1096916)
chr6 (356-498)||(1096965-1097107)
chr6 (111-294)||(1128133-1128314)
chr6 (111-290)||(1117651-1117832)
chr6 (22-266)||(1105370-1105621)
chr6 (145-266)||(1086542-1086666)
chr6 (146-294)||(1102344-1102495)
chr6 (177-241)||(1072426-1072491)
chr6 (181-264)||(7421381-7421464)
chr6 (50-115)||(1102242-1102307)
chr6 (151-230)||(1150828-1150907)
[»] chr4 (1 HSPs)
chr4 (111-294)||(8116740-8116921)
[»] chr7 (3 HSPs)
chr7 (153-264)||(26584286-26584397)
chr7 (150-264)||(26570826-26570939)
chr7 (195-264)||(26576412-26576481)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 1096626 - 1096916
Alignment:
Q  17 taataatagtgaagtttgtataagaaatgcgacaaattaagtgcacgaaaagatcaacatagcacatggatgcaatcaagagatatttaattattttatg 116  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||||||||||||  ||||||||    
T  1096626 taataatagtgaagtttgtataagaaatgcgacaaattaaatgcacgaaaagacaaacatggcacatggatgcaatcaagagatatttaaccattttatg 1096725  T
Q  117 gtgtctaatgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatctaaagga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  1096726 gtgtctaatgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttattacatttaaagga 1096825  T
Q  217 gaagaaacatgactacatttctcaaagttgcttatattatgatcatatgtgtctttgtgcttcaccttgcagcccaagttgattcacgtac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1096826 gaagaaacatgactacatttctcaaagttgcttatattatgatcatatgtgtctttgtgcttcaccttgcagcccaagttgattcacgtac 1096916  T

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Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 356 - 498
Target Start/End: Original strand, 1096965 - 1097107
Alignment:
Q  356 catctccttgttgacactaattatttatggtttacattgtagaaaaaagattacatggatgcaaggaagacagagattgtgataacgtctgctccgtaca 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1096965 catctccttgttgacactaattatttatggtttacattgtagaaaaaagattacatggatgcaaggaagacagagattgtgataacatctgctccgtaca 1097064  T
Q  456 tgctgttacaaagtgcattgggaatatgtgtcgctgcttagcc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1097065 tgctgttacaaagtgcattgggaatatgtgtcgctgcttagcc 1097107  T

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Target: chr6; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 111 - 294
Target Start/End: Original strand, 1128133 - 1128314
Alignment:
Q  111 tttatggtgtctaatgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatct 210  Q
    ||||||||||||| ||||||||   ||||||||  |||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||    
T  1128133 tttatggtgtctactgattatcttgtaaaaagg--tatttgccaatatataagtgctaaaaactagaaaataatcaaacaattttctttttgttacatct 1128230  T
Q  211 aaaggagaagaaacatgactacatttctcaaagttgcttatattatgatcatatgtgtctttgtgcttcaccttgcagcccaag 294  Q
    ||||||||||||||||||||||| |||||||  |||||||| |||||||||||||| | ||| |||||||  ||||||||||||    
T  1128231 aaaggagaagaaacatgactacaattctcaagtttgcttatgttatgatcatatgtctttttctgcttcaggttgcagcccaag 1128314  T

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Target: chr6; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 111 - 290
Target Start/End: Original strand, 1117651 - 1117832
Alignment:
Q  111 tttatggtgtctaatgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatct 210  Q
    ||||||||||||| ||||||||   ||||| || ||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||     
T  1117651 tttatggtgtctattgattatcatgtaaaaggg-gtatttgccaatatataagtgctaaaaactaagaaatgatcatacaattttctatttgttacatcc 1117749  T
Q  211 aaaggagaagaaacatgactacatttctcaaagttgctta---tattatgatcatatgtgtctttgtgcttcaccttgcagcc 290  Q
    |||||||||||||||||||| || ||||||| ||||||||   |||||||||||||||| | ||| ||||||||  |||||||    
T  1117750 aaaggagaagaaacatgactgcaattctcaaggttgcttatattattatgatcatatgtctttttctgcttcacgatgcagcc 1117832  T

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Target: chr6; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 1105370 - 1105621
Alignment:
Q  22 atagtgaagtttgtataagaaatgcgacaaattaagtgcacgaaaagatcaacatagcacatggatgcaatcaagagatatttaattattt--------- 112  Q
    ||||||||  || |||||||||||| | |||||||  ||| |||||||  ||||   ||||||||| |||||||||||||||||||| |||             
T  1105370 atagtgaaaattttataagaaatgcaataaattaatcgcatgaaaagacaaacacgacacatggatacaatcaagagatatttaattttttattattatt 1105469  T
Q  113 tatggtgtctaatgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatctaa 212  Q
    ||| |||| || || |||||   ||||||||  ||||| |||||||||||||| ||||| ||| |||||||| |||||||||||| ||||||||||| ||    
T  1105470 tatagtgtttattggttatcgtgtaaaaagg--tatttaccaatatataagtgttaaaaactaagaaatgataaaacaattttctgtttgttacatccaa 1105567  T
Q  213 aggagaagaaacatgactacatttctcaaagttgcttatattatgatcatatgt 266  Q
    | ||||||||||||||||||| |||||||| || ||||||||||| ||||||||    
T  1105568 atgagaagaaacatgactacaattctcaaatttccttatattatggtcatatgt 1105621  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 1086542 - 1086666
Alignment:
Q  145 gtatttgccaatatataagtgctaaaacctaggaaatgatcaaa-caattttctatttgttaca--tctaaaggagaagaaacatgactacatttctcaa 241  Q
    |||||||||| |||||||||||| ||| |||||||||||||||| || ||||| ||||||||||  |||||||||||| ||||||||||||| |||||||    
T  1086542 gtatttgccagtatataagtgctgaaaactaggaaatgatcaaaacagttttcgatttgttacacatctaaaggagaataaacatgactacaattctcaa 1086641  T
Q  242 agttgcttatattatgatcatatgt 266  Q
      ||||||| |||||||||||||||    
T  1086642 gtttgcttacattatgatcatatgt 1086666  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 146 - 294
Target Start/End: Original strand, 1102344 - 1102495
Alignment:
Q  146 tatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatcta----aaggagaagaaacatgactacatttctcaa 241  Q
    ||||| ||||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    || |  |||||||||||||||| |||| ||    
T  1102344 tatttcccaatatataaatgctaaaac-taggatatgatcaaacaattttcaatttgttacatctaaactaaagcaaagaaacatgactacaattctaaa 1102442  T
Q  242 agttgcttatattatgatcatatgtgtctttgtgcttcaccttgcagcccaag 294  Q
      |||||||||||||||| | |||| | ||  |||||||| ||||||||||||    
T  1102443 gtttgcttatattatgattacatgtcttttcctgcttcacattgcagcccaag 1102495  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 1072426 - 1072491
Alignment:
Q  177 gaaatgatcaaacaattttctat-ttgttacatctaaaggagaagaaacatgactacatttctcaa 241  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  1072426 gaaatggtcaaacaattttctatcttgttacatttaaaggagaagaaacatgactacaattctcaa 1072491  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 7421464 - 7421381
Alignment:
Q  181 tgatcaaacaattttctatttgttacatctaaaggagaagaaacatgactacatttctcaaagttgcttatattatgatcatat 264  Q
    |||||||||||| ||||||||| ||||  ||||| |||||||||||| ||  | |||||||| ||| |||||||||||||||||    
T  7421464 tgatcaaacaatcttctatttgctacacataaagaagaagaaacatggctgtaattctcaaatttgtttatattatgatcatat 7421381  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 1102242 - 1102307
Alignment:
Q  50 aaattaagtgcacgaaaagatcaacatagcacatggatgcaatcaagagatatttaattattttat 115  Q
    ||||| ||||||||||||||  ||||   |||||||||  ||||||||||||||||||||||||||    
T  1102242 aaattgagtgcacgaaaagacaaacacgacacatggatataatcaagagatatttaattattttat 1102307  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 1150828 - 1150907
Alignment:
Q  151 gccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatctaaaggagaagaaacatgact 230  Q
    |||||||||||  |||||||| |||| |||||||||| ||| |||||||||| ||||   ||| ||||| ||||||||||    
T  1150828 gccaatatatatatgctaaaagctagaaaatgatcaatcaactttctatttgatacaagcaaatgagaataaacatgact 1150907  T

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Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 111 - 294
Target Start/End: Original strand, 8116740 - 8116921
Alignment:
Q  111 tttatggtgtctaatgattatcccttaaaaaggagtatttgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatct 210  Q
    ||||||||||||| |||||| ||  |||||| |  |||||| |||||||||||||||||||  ||||||||||||||||||||| || || |||| ||      
T  8116740 tttatggtgtctattgattaccctgtaaaaatg--tatttgtcaatatataagtgctaaaaattaggaaatgatcaaacaatttacttttcgttatatgc 8116837  T
Q  211 aaaggagaagaaacatgactacatttctcaaagttgcttatattatgatcatatgtgtctttgtgcttcaccttgcagcccaag 294  Q
    ||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||| ||  ||||| || ||||||||||||    
T  8116838 aaaggagcagaaacatgactacaattttcaaatttgcttatattatgatcatatgtgttttcctgcttaacattgcagcccaag 8116921  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 26584286 - 26584397
Alignment:
Q  153 caatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatctaaaggagaagaaacatgactacatttctcaaagttgcttata 252  Q
    |||||||||||||||| || |||  || || |||||||||| ||||||||||||||  ||| ||||||||| ||| || || |||| ||  ||| |||||    
T  26584286 caatatataagtgctacaaactataaagtggtcaaacaattatctatttgttacatgcaaaagagaagaaatatggctgcaattcttaagtttgtttata 26584385  T
Q  253 ttatgatcatat 264  Q
    ||||||||||||    
T  26584386 ttatgatcatat 26584397  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 264
Target Start/End: Original strand, 26570826 - 26570939
Alignment:
Q  150 tgccaatatataagtgctaaaacctaggaaatgatcaaacaattttctatttgttacatctaaaggagaagaaacatgactacatttctcaaagttgctt 249  Q
    |||||||||| |||||||||||  ||  || || |||||||||| |||||||||||||   ||||||||||||| ||| |  || |||| ||  ||| ||    
T  26570826 tgccaatata-aagtgctaaaaaataaaaagtggtcaaacaattatctatttgttacacacaaaggagaagaaatatggcatcaattcttaagtttgttt 26570924  T
Q  250 atattatgatcatat 264  Q
    |||||||||||||||    
T  26570925 atattatgatcatat 26570939  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 26576412 - 26576481
Alignment:
Q  195 tctatttgttacatctaaaggagaagaaacatgactacatttctcaaagttgcttatattatgatcatat 264  Q
    ||||||||||||||  ||||||||||||||||| | | | |||| ||  ||| |||||||||||||||||    
T  26576412 tctatttgttacatgcaaaggagaagaaacatggcaatacttcttaagtttgtttatattatgatcatat 26576481  T

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