View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_52 (Length: 238)
Name: NF19813_low_52
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39975679 - 39975458
Alignment:
| Q |
1 |
aaattcttgggaaggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgag |
100 |
Q |
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| T |
39975679 |
aaattcttgggaaggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgag |
39975580 |
T |
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| Q |
101 |
gtttgagtgtacaaattttactaggagggataagtatatgatgcttgcagggaatgaagggattgttccacaagttagtaatttgaaaaaatgctattga |
200 |
Q |
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| T |
39975579 |
gtttgagtgtacaaattttactaggagggataagtatatgatgcttgcagggaatgaagggattgttcaacaagttagtaatttgaaaaaatgctattga |
39975480 |
T |
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| Q |
201 |
tgatgatcctatatatgtatat |
222 |
Q |
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|||| ||||||||||||||||| |
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| T |
39975479 |
tgatcatcctatatatgtatat |
39975458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 16147446 - 16147298
Alignment:
| Q |
12 |
aaggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgta |
111 |
Q |
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| T |
16147446 |
aaggtaccaaaagaactcacttgtgctggtggaaaatctccttttgaagtggctaattatatacaaagagagttgggtgatgctttagggtttgagtgta |
16147347 |
T |
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| Q |
112 |
caaattttactaggagggataagtatatgatgcttgcagggaatgaagg |
160 |
Q |
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| T |
16147346 |
caaatattacaaggagggataaatatatgatgttagctgggaatgaagg |
16147298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 16195498 - 16195634
Alignment:
| Q |
21 |
aaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaatttta |
120 |
Q |
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|||||||| || |||||||| |||||||| | ||||||||||| |||||||||||||| ||||| ||||||||||| | |||||||| || ||| ||| |
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| T |
16195498 |
aaagaactcacttgtgctggtggaaagtctccttttgaagtggctgattatatacagaaagaattgagtgatgctttgggatttgagtgcaccaatatta |
16195597 |
T |
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| Q |
121 |
ctaggagggataagtatatgatgcttgcagggaatga |
157 |
Q |
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| T |
16195598 |
caaggagggataaatatatgatgttagctgggaatga |
16195634 |
T |
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