View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19813_low_54 (Length: 236)

Name: NF19813_low_54
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19813_low_54
NF19813_low_54
[»] chr3 (9 HSPs)
chr3 (1-214)||(23025478-23025691)
chr3 (1-205)||(23141484-23141688)
chr3 (1-214)||(23150085-23150298)
chr3 (16-214)||(23147127-23147325)
chr3 (16-214)||(23040252-23040450)
chr3 (1-213)||(23018462-23018674)
chr3 (16-214)||(23037375-23037573)
chr3 (98-214)||(23034058-23034174)
chr3 (98-214)||(22987392-22987508)
[»] scaffold0554 (1 HSPs)
scaffold0554 (16-214)||(5113-5311)
[»] chr6 (2 HSPs)
chr6 (16-202)||(21781154-21781340)
chr6 (98-214)||(14307570-14307686)
[»] chr1 (2 HSPs)
chr1 (66-194)||(12638246-12638374)
chr1 (66-176)||(12611264-12611374)
[»] chr8 (1 HSPs)
chr8 (98-214)||(23611457-23611573)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 23025691 - 23025478
Alignment:
Q  1 aacctccctaatggacctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23025691 aacctccctaatggacctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaat 23025592  T
Q  101 atggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23025591 atggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaactt 23025492  T
Q  201 tgcaaccaggcctc 214  Q
    ||||||||||||||    
T  23025491 tgcaaccaggcctc 23025478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 23141688 - 23141484
Alignment:
Q  1 aacctccctaatggacctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaat 100  Q
    ||||||||||| || |||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||  ||||||| |||| ||||| ||| |||    
T  23141688 aacctccctaaagggcctataaagctacctattataggaaatttacacaatctgttaagttctcaaccacataaaaaactaagagatttggctagaaaat 23141589  T
Q  101 atggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaactt 200  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  23141588 atggacccttgatgcatcttcaacttggagagatttccatgattgtaatttcatcacctgattgtgctagggaggtgatgaaaactcatgatattaactt 23141489  T
Q  201 tgcaa 205  Q
    |||||    
T  23141488 tgcaa 23141484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 23150298 - 23150085
Alignment:
Q  1 aacctccctaatggacctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaat 100  Q
    ||||||||||| || |||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||| |||| ||||| ||| |||    
T  23150298 aacctccctaaagggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactaagagatttggctagaaaat 23150199  T
Q  101 atggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaactt 200  Q
    ||||||||||||||||||| ||||||||| |||||||| |  |||| ||||||||| | |||||||||||||||||||||||||||||||| ||||||||    
T  23150198 atggacccttgatgcatcttcaacttggacagatttccatggttgtaatttcatcatctgactgtgctagggaggtgatgaaaactcatgacattaactt 23150099  T
Q  201 tgcaaccaggcctc 214  Q
    |||||  |||||||    
T  23150098 tgcaataaggcctc 23150085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 23147325 - 23147127
Alignment:
Q  16 cctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaatatggacccttgatgc 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||| || |||||||||| | | ||||||||||  ||||||    
T  23147325 cctagaaagttaccaattataggaaatatacacaatctgttaagctctcaaccccatcaaaaattaagagacttggcgaaaaaatatggaccagtgatgc 23147226  T
Q  116 atctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaactttgcaaccaggcctc 214  Q
    |||| |||||||||||| ||||   ||| ||||||||||| || || |||||||| |||||||||||||| ||||||||| ||||| || | |||||||    
T  23147225 atcttcaacttggagaggtttctgctatggtcatttcatcccccgagtgtgctagtgaggtgatgaaaacccatgatattcacttttcatcaaggcctc 23147127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 23040450 - 23040252
Alignment:
Q  16 cctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaatatggacccttgatgc 115  Q
    |||| |||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| | | ||||||||||| ||||||    
T  23040450 cctataaagttacctattataggaaatatacacaatctgttaacctctcaaccccatcgaaaactaagagacttggccaaaaaatatggacccctgatgc 23040351  T
Q  116 atctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaactttgcaaccaggcctc 214  Q
    |||| |||||||||||| ||||   ||| ||||||||||| || || |||||| | ||||| |||||||| ||||||||| |||||||| | |||||||    
T  23040350 atcttcaacttggagaggtttctgctatggtcatttcatcgcccgagtgtgctggcgaggtaatgaaaacccatgatattcactttgcatcaaggcctc 23040252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 23018674 - 23018462
Alignment:
Q  1 aacctccctaatggacctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaat 100  Q
    |||||||| || || |||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||| ||||| || | |||||||| | | |||    
T  23018674 aacctcccaaaagggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaaaaaat 23018575  T
Q  101 atggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaactt 200  Q
    ||||||||||||||||||| |||||||||||  ||||   |||||||||||||||| | || | ||| | |||||| |||||||| ||||||||| ||||    
T  23018574 atggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatattcactt 23018475  T
Q  201 tgcaaccaggcct 213  Q
    |||||| ||||||    
T  23018474 tgcaacaaggcct 23018462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 23037573 - 23037375
Alignment:
Q  16 cctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaatatggacccttgatgc 115  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||||||||| ||| | ||| || |||||||||| | | ||||||||||  ||||||    
T  23037573 cctataaagttacctattataggaaatatacacaatctgttaagctctcaaccccataggaaattaagagacttggccaaaaaatatggaccagtgatgc 23037474  T
Q  116 atctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaactttgcaaccaggcctc 214  Q
    |||| |||||||||||| ||||   ||| |||||||| ||||| || ||||| || |||||||||||||||||||||||| ||||| || | |||||||    
T  23037473 atcttcaacttggagaggtttctaatatggtcatttcgtcacccgagtgtgccagcgaggtgatgaaaactcatgatattcacttttcatcaaggcctc 23037375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 23034174 - 23034058
Alignment:
Q  98 aatatggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaa 197  Q
    |||||||| ||||||||||||| |||||||||||| ||||   |||||||||||||||  | || | ||||||||||||||||||||| ||||||||| |    
T  23034174 aatatggatccttgatgcatcttcaacttggagaggtttctactattgtcatttcatccactgagtttgctagggaggtgatgaaaacccatgatattca 23034075  T
Q  198 ctttgcaaccaggcctc 214  Q
    ||||||||| |||||||    
T  23034074 ctttgcaacaaggcctc 23034058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 22987508 - 22987392
Alignment:
Q  98 aatatggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaa 197  Q
    |||||||||||||||||||||| |||||||| ||||| |  || |||||  |||| ||||||||   ||| ||||||||  ||||||||||||||||||     
T  22987508 aatatggacccttgatgcatctacaacttggtgagatatttttcattgttgtttcctcaccagaagttgcaagggaggtcttgaaaactcatgatattat 22987409  T
Q  198 ctttgcaaccaggcctc 214  Q
     |||||| | |||||||    
T  22987408 atttgcatcaaggcctc 22987392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 5113 - 5311
Alignment:
Q  16 cctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaatatggacccttgatgc 115  Q
    |||||||||||||| |||||||||||||| |||||| || ||||||||||||| ||| | ||| || | |||||||| | | ||||||||||| ||||||    
T  5113 cctagaaagctacctattataggaaatattcacaatttgctaagctctcaaccccataggaaattaagtgacttggccaaaaaatatggacccgtgatgc 5212  T
Q  116 atctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaactttgcaaccaggcctc 214  Q
    |||| ||||||||||| |||||   |||||| |||||||||||||| |  ||| | ||||||||||||||||||||||||||||| ||||| |||||||    
T  5213 atcttcaacttggagaaatttcaactattgttatttcatcaccagattacgctcgagaggtgatgaaaactcatgatattaacttcgcaacaaggcctc 5311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 21781340 - 21781154
Alignment:
Q  16 cctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagacttggcaagagaatatggacccttgatgc 115  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||| | || |||||||||| | | ||||||||||  ||||||    
T  21781340 cctagaaagttacctattataggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggaccagtgatgc 21781241  T
Q  116 atctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaactttg 202  Q
    |||| |||||||||||| ||||   |||||||||| |||| || || ||||||| |||||||||||||||  |||||||||||||||    
T  21781240 atcttcaacttggagaggtttctactattgtcattacatctccggagtgtgctaaggaggtgatgaaaaccaatgatattaactttg 21781154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 14307686 - 14307570
Alignment:
Q  98 aatatggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaa 197  Q
    |||||||||||||||||||||| |||||||| ||||| |  || ||||| ||||| ||||| ||   ||||| ||||||  | ||||| ||||||||||     
T  14307686 aatatggacccttgatgcatcttcaacttggtgagatctttttcattgttatttcttcacctgaagttgctaaggaggttttaaaaacacatgatattat 14307587  T
Q  198 ctttgcaaccaggcctc 214  Q
    ||||||| | |||||||    
T  14307586 ctttgcatcaaggcctc 14307570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 12638374 - 12638246
Alignment:
Q  66 accacatcgaaaactacgagacttggcaagagaatatggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgt 165  Q
    |||||||| |||| || |||| ||||| | ||  |||||||||||||||||  | |||||||||||||| ||    |||||  |||| |||||||| | |    
T  12638374 accacatcaaaaattaagagatttggccaaagtgtatggacccttgatgcacttacaacttggagagatctctgcaattgttgtttcctcaccagagtat 12638275  T
Q  166 gctagggaggtgatgaaaactcatgatat 194  Q
    ||||||||||| |||||||||||||||||    
T  12638274 gctagggaggtaatgaaaactcatgatat 12638246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 12611374 - 12611264
Alignment:
Q  66 accacatcgaaaactacgagacttggcaagagaatatggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgt 165  Q
    ||||||||||||| || |||||||||| | |   ||||||||||||||||| || |||||||||||||| ||    |||||  ||||||| ||||| | |    
T  12611374 accacatcgaaaattaagagacttggcgaaaatttatggacccttgatgcacctacaacttggagagatctctgcaattgttgtttcatcgccagagtat 12611275  T
Q  166 gctagggaggt 176  Q
    |||||||||||    
T  12611274 gctagggaggt 12611264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 23611573 - 23611457
Alignment:
Q  98 aatatggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaaactcatgatattaa 197  Q
    |||||||||||||||||||||| |||||||| ||||| |  || ||||| ||||| ||||||||   ||| | ||||||  | ||||| ||||||||||     
T  23611573 aatatggacccttgatgcatcttcaacttggtgagatctttttcattgttatttcttcaccagaagttgcaaaggaggttttaaaaacacatgatattat 23611474  T
Q  198 ctttgcaaccaggcctc 214  Q
    ||||||| | |||||||    
T  23611473 ctttgcatcaaggcctc 23611457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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