View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_55 (Length: 236)
Name: NF19813_low_55
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_55 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 37299640 - 37299861
Alignment:
| Q |
15 |
actacataactttttccaacatttatgtcataaataatgaacacaaaaactaattaatcaatcaagaaatctaagttactgaaattgagtagacaaaatg |
114 |
Q |
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| T |
37299640 |
actacataactttttccaacatttatgtcataaataatgaacacaaaaactaattaatcaatcaagaaatctaagttactgaaattgagtagacaaaatg |
37299739 |
T |
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| Q |
115 |
gaatgtatcatacatcttcaaaaccttaaagaaggataaaacggatcatgtaatgagaaattaaccactgtttgcatggtagtgcaagatctaattaaag |
214 |
Q |
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| T |
37299740 |
gaatgtatcatacatcttcaaaaccttaaagaaggataaaacggatcatgtaatgagaaattaaccactgtttgcatggtagtgcaagatctaattaaag |
37299839 |
T |
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| Q |
215 |
cacagatgacaatagaaggaac |
236 |
Q |
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|||| ||||||||||||||||| |
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| T |
37299840 |
cacaaatgacaatagaaggaac |
37299861 |
T |
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