View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19813_low_8 (Length: 570)
Name: NF19813_low_8
Description: NF19813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19813_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 30513657 - 30513181
Alignment:
| Q |
1 |
tatcactacaataacatcagaatcatctataccttttatgatataaatgtttcaaaagggtatcttattatttaccataaaaacctattgtaaggcttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30513657 |
tatcactacaataacatcagaatcatctataccttttatgatatacatgtttcaaaagggtatcttattatttaccataaaaacctattgaaaggcttta |
30513558 |
T |
|
| Q |
101 |
tcatgttaataatttgcagataaagctatgttcactgaggctagcaaaggaattcatgaaacgaataactaaagaaataaaatctcatgaagctttgcat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30513557 |
tcatgttaataacttgcagataaagctatgttcactgaggctagcaaaggaattcatgaaacgaataactaaagaaataaaatctcatgaagctttgcat |
30513458 |
T |
|
| Q |
201 |
gaagataataataacctcttattacaaggagttaagtttgcattcagagtacatcaggtacaataacattcctcagaactttctgaattcgatatttact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
30513457 |
gaagataataataacctcttattacaaggagttaagtttgcattcagagtacatcaggtacaataacattcctcagaactttctgaatttgacatttact |
30513358 |
T |
|
| Q |
301 |
tttttatccaactcatcacccatcaagacattcagtttgcaggtggctttgatcctgacactacacaaacatttctagaattgaagaaagttggttgtgc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30513357 |
tttttatccaactcatcacccatcaagacattcagtttgcaggtggctttgatcctgacactacacaaacttttctagaattgaagaaagttggttgtgc |
30513258 |
T |
|
| Q |
401 |
tgtaccaagcaatagtaacctcatcatcaatcctctcaaacatgttaaagtttgtcacaaacatgtatcttaacata |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30513257 |
tgtaccaagcaatagtaacctcatcatcaatcctctcaaacatgttaaagtttgtcacaaacatgtatcttaacata |
30513181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 30553997 - 30553521
Alignment:
| Q |
1 |
tatcactacaataacatcagaatcatctataccttttatgatataaatgtttcaaaagggtatcttattatttaccataaaaacctattgtaaggcttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
30553997 |
tatcactacaataacatcagaatcatctataccttttatgatatacatgtttcaaaagggtatcttattatttaccataaaaacctattgaaaggcttta |
30553898 |
T |
|
| Q |
101 |
tcatgttaataatttgcagataaagctatgttcactgaggctagcaaaggaattcatgaaacgaataactaaagaaataaaatctcatgaagctttgcat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30553897 |
tcatgttaataacttgcagataaagctatgttcactgaggctagcaaaggaattcatgaaacgaataactaaagaaataaaatctcatgaagctttgcat |
30553798 |
T |
|
| Q |
201 |
gaagataataataacctcttattacaaggagttaagtttgcattcagagtacatcaggtacaataacattcctcagaactttctgaattcgatatttact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
30553797 |
gaagataataataacctcttattacaaggagttaagtttgcattcagagtacatcaggtacaataacattcctcagaactttctgaatttgacatttact |
30553698 |
T |
|
| Q |
301 |
tttttatccaactcatcacccatcaagacattcagtttgcaggtggctttgatcctgacactacacaaacatttctagaattgaagaaagttggttgtgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
30553697 |
tttttatccaactcatcacccatcaagacattcagtttgcaggtggctttgatcctgacactacacaaacttttctagaattgaagaaagttggttgtgc |
30553598 |
T |
|
| Q |
401 |
tgtaccaagcaatagtaacctcatcatcaatcctctcaaacatgttaaagtttgtcacaaacatgtatcttaacata |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30553597 |
tgtaccaagcaatagtaacctcatcatcaatcctctcaaacatgttaaagtttgtcacaaacatgtatcttaacata |
30553521 |
T |
|
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