View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19814_high_3 (Length: 422)
Name: NF19814_high_3
Description: NF19814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19814_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 25 - 410
Target Start/End: Original strand, 42412159 - 42412546
Alignment:
| Q |
25 |
tcaacaggtaatataaatattaaaaacatgccaaattaaaatgaatacatcacctctttcaaaagaataaaactacatatatttctcacaaaattaatta |
124 |
Q |
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| T |
42412159 |
tcaacagataatataaatattaaaaacatgccaaattaaaatgaatacatcacctctttcaaaagaataaaactacatatatttctcacaaaattaatta |
42412258 |
T |
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| Q |
125 |
ttttatttgaatataactaatatacttagcacaccattgaaataaataaactagaactccactttcttattgcagttgattgatttcagaaattg-tttc |
223 |
Q |
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| T |
42412259 |
ttttatttgaatataactaatatacttagcacaccattgaaataaataaactagaactccactttcttattgcagttgattgatttcagaaattgttttc |
42412358 |
T |
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| Q |
224 |
tttggag-agttttttatccaatttcataggttgtgttgcccagtacattctgttgctggtctttgccctccacggcaaacaccaacatttgttgggcaa |
322 |
Q |
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| T |
42412359 |
tttggagaatttttttatccaatttcataggttgtgttgcccagtacattctgttgctggtctttgccctccacggcaaacaccaacatttgttgggcaa |
42412458 |
T |
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| Q |
323 |
ttgagacagttgtttgcaaagcttcctttgaaatttgtggatttgtgagttaactccaatggaagatttcccgtaagaaagttgtgat |
410 |
Q |
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| T |
42412459 |
ttgagacagttgtttgcaaagcttcctttgaaatttgtggatttgtgagttaactccaatggaagatttcctgtaagaaagttgtgat |
42412546 |
T |
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