View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19814_high_8 (Length: 310)

Name: NF19814_high_8
Description: NF19814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19814_high_8
NF19814_high_8
[»] chr4 (16 HSPs)
chr4 (14-237)||(4019217-4019441)
chr4 (14-178)||(3962634-3962795)
chr4 (18-122)||(3948173-3948277)
chr4 (18-100)||(3805630-3805712)
chr4 (44-109)||(4003070-4003135)
chr4 (30-109)||(4011549-4011628)
chr4 (239-293)||(35577352-35577406)
chr4 (239-293)||(43593850-43593904)
chr4 (230-293)||(1701203-1701266)
chr4 (44-109)||(4026306-4026371)
chr4 (115-170)||(3805547-3805603)
chr4 (238-286)||(13757134-13757182)
chr4 (239-291)||(50377326-50377378)
chr4 (238-293)||(18811331-18811386)
chr4 (187-231)||(3962793-3962837)
chr4 (261-293)||(51030170-51030202)
[»] chr6 (19 HSPs)
chr6 (238-293)||(19383001-19383056)
chr6 (239-293)||(2666148-2666202)
chr6 (237-293)||(23160783-23160839)
chr6 (238-293)||(17724584-17724639)
chr6 (239-286)||(19214781-19214828)
chr6 (238-293)||(21393430-21393485)
chr6 (239-293)||(21683171-21683225)
chr6 (246-286)||(32616905-32616945)
chr6 (239-286)||(19002778-19002825)
chr6 (239-293)||(8848081-8848134)
chr6 (239-293)||(14603979-14604033)
chr6 (239-293)||(15907097-15907151)
chr6 (239-293)||(20882002-20882056)
chr6 (239-292)||(8909971-8910024)
chr6 (240-286)||(14603728-14603774)
chr6 (239-293)||(18691735-18691789)
chr6 (239-293)||(31569309-31569362)
chr6 (241-293)||(13548340-13548392)
chr6 (238-286)||(18801485-18801533)
[»] scaffold0557 (1 HSPs)
scaffold0557 (239-293)||(6435-6489)
[»] scaffold0337 (1 HSPs)
scaffold0337 (239-293)||(793-847)
[»] scaffold0072 (1 HSPs)
scaffold0072 (239-293)||(46284-46338)
[»] chr5 (12 HSPs)
chr5 (239-293)||(22362557-22362611)
chr5 (246-291)||(29391371-29391416)
chr5 (239-291)||(21112711-21112763)
chr5 (246-293)||(27032685-27032732)
chr5 (239-286)||(38925437-38925484)
chr5 (239-293)||(42883077-42883131)
chr5 (257-290)||(4002737-4002770)
chr5 (239-293)||(35328810-35328864)
chr5 (260-293)||(23192505-23192538)
chr5 (234-279)||(28727658-28727703)
chr5 (249-293)||(22545818-22545862)
chr5 (236-292)||(32722016-32722071)
[»] chr2 (7 HSPs)
chr2 (239-293)||(2707139-2707193)
chr2 (239-293)||(24863912-24863966)
chr2 (239-293)||(31898589-31898643)
chr2 (238-293)||(25417079-25417134)
chr2 (239-293)||(24079513-24079567)
chr2 (239-293)||(29406694-29406748)
chr2 (256-293)||(45073821-45073858)
[»] scaffold0553 (1 HSPs)
scaffold0553 (236-293)||(6546-6603)
[»] chr3 (13 HSPs)
chr3 (237-293)||(15212735-15212791)
chr3 (237-293)||(15251954-15252010)
chr3 (238-293)||(46124027-46124082)
chr3 (239-293)||(9767936-9767990)
chr3 (239-293)||(11028072-11028125)
chr3 (239-291)||(41935248-41935300)
chr3 (239-286)||(21972645-21972692)
chr3 (239-286)||(21995076-21995123)
chr3 (239-286)||(22155376-22155423)
chr3 (239-293)||(53157279-53157333)
chr3 (261-293)||(48119770-48119802)
chr3 (239-293)||(6079883-6079937)
chr3 (239-293)||(18740871-18740925)
[»] chr7 (10 HSPs)
chr7 (239-286)||(27258279-27258326)
chr7 (239-293)||(9456941-9456995)
chr7 (239-286)||(39703136-39703183)
chr7 (239-286)||(48644162-48644209)
chr7 (239-286)||(1723429-1723476)
chr7 (238-293)||(13796593-13796648)
chr7 (239-293)||(18535662-18535717)
chr7 (248-286)||(5380130-5380168)
chr7 (239-293)||(10206659-10206713)
chr7 (256-293)||(3568527-3568564)
[»] scaffold0077 (1 HSPs)
scaffold0077 (239-293)||(52542-52596)
[»] chr8 (11 HSPs)
chr8 (239-293)||(23120522-23120576)
chr8 (239-293)||(43974816-43974870)
chr8 (239-286)||(8223730-8223777)
chr8 (246-293)||(21349405-21349452)
chr8 (238-293)||(22216422-22216477)
chr8 (239-286)||(45537336-45537383)
chr8 (239-293)||(508262-508316)
chr8 (244-286)||(13586328-13586370)
chr8 (239-293)||(16047110-16047164)
chr8 (263-292)||(44337302-44337331)
chr8 (261-293)||(13505303-13505335)
[»] chr1 (6 HSPs)
chr1 (239-293)||(15723295-15723349)
chr1 (237-293)||(44201676-44201732)
chr1 (234-293)||(46351885-46351944)
chr1 (228-293)||(19193811-19193876)
chr1 (241-293)||(2248044-2248096)
chr1 (239-293)||(46123012-46123066)
[»] scaffold0039 (2 HSPs)
scaffold0039 (239-292)||(84243-84296)
scaffold0039 (239-292)||(102232-102285)
[»] scaffold0017 (1 HSPs)
scaffold0017 (238-293)||(38601-38656)
[»] scaffold0422 (1 HSPs)
scaffold0422 (249-286)||(10394-10431)
[»] scaffold0214 (2 HSPs)
scaffold0214 (225-286)||(21693-21754)
scaffold0214 (246-286)||(29244-29284)
[»] scaffold0179 (1 HSPs)
scaffold0179 (239-293)||(28446-28500)
[»] scaffold0086 (1 HSPs)
scaffold0086 (260-293)||(42477-42510)
[»] scaffold0281 (1 HSPs)
scaffold0281 (237-293)||(4591-4647)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 4019441 - 4019217
Alignment:
Q  14 agagtgtatagctccaccaaggagcaaatttggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagttttat 113  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4019441 agagtgtatagctccaccaaggtgcaaatttggagacatgctttgaacaaatctgctaatttatctggaattaagtcatcagattttcggtaagttttat 4019342  T
Q  114 atatttttt-acgtcataatttttagactatctggcctccattatttttaaaataaatatatgcaaattatcaccaactgaatggtttcacttgaaagtg 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  4019341 atatttttttacgtcataatttttagactatctggcctccattatttttaagataaatatatgcaaattatcaccaactgaatggtttcacttgaaagta 4019242  T
Q  213 aaacttttaagttgttattattcaa 237  Q
    || ||||||||||||||||||||||    
T  4019241 aagcttttaagttgttattattcaa 4019217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 3962634 - 3962795
Alignment:
Q  14 agagtgtatagctccaccaaggagcaaatttggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagttttat 113  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       
T  3962634 agagggtatagctccaccaaggtgcaaatttggagacatgctttgaacaaatctgctaatttatctggaattaagtcatcagattttcggtaagttt--- 3962730  T
Q  114 atattttttacgtcataa-tttttagactatctggcctccattatttttaaaataaatatatgcaa 178  Q
     | |||||||| |||||| |||||||||||| ||||||||||||||||||| |||||| |||||||    
T  3962731 -ttttttttacctcataattttttagactatttggcctccattatttttaagataaatttatgcaa 3962795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 3948277 - 3948173
Alignment:
Q  18 tgtatagctccaccaaggagcaaatttggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagttttatatat 117  Q
    |||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  3948277 tgtatagctccaccaaggtgcatatttggagacatgctttcaaaaaatctgctaatttatctggaattaagtcatcggattttcggtaagttttatatat 3948178  T
Q  118 ttttt 122  Q
    |||||    
T  3948177 ttttt 3948173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 3805712 - 3805630
Alignment:
Q  18 tgtatagctccaccaaggagcaaatttggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagatttt 100  Q
    |||||| ||||| ||||| | ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  3805712 tgtataactccatcaaggtgaaaatttggagacatgctttcaacaaatctgctaatttatctggaattaagtcatcagatttt 3805630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 4003135 - 4003070
Alignment:
Q  44 tggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagtt 109  Q
    |||||||| ||||||||||||||||||||||  |||||||||||||||| ||||||||||| ||||    
T  4003135 tggagacacgctttgaacaaatctgctaatttgtctggaattaagtcattagattttcggttagtt 4003070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 4011628 - 4011549
Alignment:
Q  30 ccaaggagcaaatttggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagtt 109  Q
    |||||| ||| || ||||||||||||||||||| |||||||||||  || |||||||||||||| |||||||||| ||||    
T  4011628 ccaaggtgcagatatggagacatgctttgaacacatctgctaatttgtcaggaattaagtcatctgattttcggttagtt 4011549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 35577352 - 35577406
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  35577352 actagcgtccagacgggcactcccgtgcccgtctgtccgcattttttattgcgct 35577406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 43593904 - 43593850
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  43593904 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgct 43593850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 1701203 - 1701266
Alignment:
Q  230 ttattcaacactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||| || |||||| ||||||||| ||||||||||||||||| ||| || |||||||||||||    
T  1701203 ttattaaaaactagcgtccagacgggcactcccgtgcccgtctatccactctttctattgcgct 1701266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 4026371 - 4026306
Alignment:
Q  44 tggagacatgctttgaacaaatctgctaattcatctggaattaagtcatcagattttcggtaagtt 109  Q
    |||||| |||||||||||||||||||||| |  || ||||||||||||| ||||| ||||| ||||    
T  4026371 tggagatatgctttgaacaaatctgctaacttgtcaggaattaagtcattagattatcggttagtt 4026306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 3805603 - 3805547
Alignment:
Q  115 tattttttacgtcata-atttttagactatctggcctccattatttttaaaataaat 170  Q
    |||||||||| ||||| ||||||||| ||| ||||||||||||||||||| ||||||    
T  3805603 tattttttacctcatacatttttagagtatttggcctccattatttttaagataaat 3805547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 13757134 - 13757182
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    ||||||| ||||||||| ||||||||||||||||||| |||| ||||||    
T  13757134 cactagcgtccagacgggcactcccgtgcccgtctgttcgctctttcta 13757182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 50377326 - 50377378
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcg 291  Q
    |||||| | ||||||| |||||||||||||||||||||||| |||||| ||||    
T  50377326 actagcgttcagacgggcactcccgtgcccgtctgtccgctctttctactgcg 50377378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 18811386 - 18811331
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||| ||||||||| || |||||||||||||||||| || |||||| ||||||    
T  18811386 cactagcgtccagacgggcattcccgtgcccgtctgtccactctttctactgcgct 18811331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 3962793 - 3962837
Alignment:
Q  187 caactgaatggtttcacttgaaagtgaaacttttaagttgttatt 231  Q
    |||||||||| ||| ||||||||||| | ||||||||||||||||    
T  3962793 caactgaatgtttttacttgaaagtgtagcttttaagttgttatt 3962837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 51030170 - 51030202
Alignment:
Q  261 ccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||||||||||||||||||||||| ||||||    
T  51030170 ccgtgcccgtctgtccgctttttctactgcgct 51030202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 19383056 - 19383001
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  19383056 cactagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgct 19383001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 2666202 - 2666148
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| ||||||    
T  2666202 actagcatccagacgggcactcccgtgcccgtctgtccgttttttctactgcgct 2666148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 23160839 - 23160783
Alignment:
Q  237 acactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  23160839 acactagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgct 23160783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 17724639 - 17724584
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  17724639 cactagcgtccagacgggcactcccatgcccgtctgtccgctttttctactgcgct 17724584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 19214781 - 19214828
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  19214781 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttcta 19214828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 21393485 - 21393430
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  21393485 cactagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgct 21393430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 21683171 - 21683225
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| | ||||||| |||||||||||||||||||||||| |||||||||||||    
T  21683171 actagcgttcagacgggcactcccgtgcccgtctgtccgctctttctattgcgct 21683225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 32616905 - 32616945
Alignment:
Q  246 tccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  32616905 tccagacgggcactcccgtgcccgtctgtccgctttttcta 32616945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 19002825 - 19002778
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  19002825 actagcgtccagacgggcactcccgtacccgtctgtccgctttttcta 19002778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 8848081 - 8848134
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||| ||||||    
T  8848081 actagcgtccagaggg-cactcccgtgcccgtctgtccgctttttctactgcgct 8848134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 14604033 - 14603979
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||| ||||||||||| ||||||||| ||||||    
T  14604033 actagcgtccagacgggcactcccgtacccgtctgtccactttttctactgcgct 14603979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 15907151 - 15907097
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| || |||||| |||||||||||||||||||||||| |||||| ||||||    
T  15907151 actagcgtctagacgggcactcccgtgcccgtctgtccgctctttctactgcgct 15907097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 20882056 - 20882002
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| | ||||||| |||||||||||| ||||||||||| |||||||||||||    
T  20882056 actagcgttcagacgggcactcccgtgcctgtctgtccgctctttctattgcgct 20882002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 8910024 - 8909971
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgc 292  Q
    |||||| ||||||||| ||||| |||||||||||| |||||||||||| |||||    
T  8910024 actagcgtccagacgggcactctcgtgcccgtctgcccgctttttctactgcgc 8909971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 14603728 - 14603774
Alignment:
Q  240 ctagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    ||||| || |||||| |||||| ||||||||||||||||||||||||    
T  14603728 ctagcgtcaagacggccactccggtgcccgtctgtccgctttttcta 14603774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 18691735 - 18691789
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| || |||||| || |||||||||| ||||||||||||||||| ||||||    
T  18691735 actagcgtctagacgggcattcccgtgcccatctgtccgctttttctactgcgct 18691789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 31569309 - 31569362
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||||| |||||| |||||| ||||||||||||||||| |||||| ||||||    
T  31569309 actagcatctagacgggcactcc-gtgcccgtctgtccgctctttctactgcgct 31569362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 13548340 - 13548392
Alignment:
Q  241 tagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||| ||||||||| || || | ||||||||||||||||||||||| ||||||    
T  13548340 tagcgtccagacgggcattctcatgcccgtctgtccgctttttctactgcgct 13548392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 18801533 - 18801485
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    ||||||| |||| |||| ||||||||||||||||||| |||| ||||||    
T  18801533 cactagcgtccaaacgggcactcccgtgcccgtctgttcgctctttcta 18801485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 6435 - 6489
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||    
T  6435 actagcatccagacgggcactcccgtgcctgtctgtccgctctttctattgcgct 6489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 847 - 793
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  847 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgct 793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 46284 - 46338
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  46284 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgct 46338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 22362557 - 22362611
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  22362557 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgct 22362611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 29391416 - 29391371
Alignment:
Q  246 tccagacggtcactcccgtgcccgtctgtccgctttttctattgcg 291  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  29391416 tccagacggacactcccgtgcccgtttgtccgctttttctattgcg 29391371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 21112711 - 21112763
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcg 291  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||| ||||    
T  21112711 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcg 21112763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 27032732 - 27032685
Alignment:
Q  246 tccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  27032732 tccagacgggcactcccgtgcccgtctgtccgctctttctactgcgct 27032685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 38925437 - 38925484
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  38925437 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttcta 38925484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 42883131 - 42883077
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||| || ||||||    
T  42883131 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttttactgcgct 42883077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 4002770 - 4002737
Alignment:
Q  257 actcccgtgcccgtctgtccgctttttctattgc 290  Q
    ||||||||||||||||||||||||||||||||||    
T  4002770 actcccgtgcccgtctgtccgctttttctattgc 4002737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 35328810 - 35328864
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| || || |||||||||||||||||| |||||| ||||||    
T  35328810 actagcgtccagacgggcattcacgtgcccgtctgtccgctctttctactgcgct 35328864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Original strand, 23192505 - 23192538
Alignment:
Q  260 cccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||||||||||||| ||||||||||||||||    
T  23192505 cccgtgcccgtctgtccactttttctattgcgct 23192538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 28727658 - 28727703
Alignment:
Q  234 tcaacactagcatccagacggtcactcccgtgcccgtctgtccgct 279  Q
    ||||||||||| | ||||||| ||||||||||||| ||||||||||    
T  28727658 tcaacactagcgttcagacgggcactcccgtgcccatctgtccgct 28727703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 22545862 - 22545818
Alignment:
Q  249 agacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| |||||||||||||||||||||||| | | |||||||||    
T  22545862 agacgggcactcccgtgcccgtctgtccgctctatttattgcgct 22545818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 32722016 - 32722071
Alignment:
Q  236 aacactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgc 292  Q
    ||||||||| ||||||||| |||||||||||||||| |||  ||||||||| |||||    
T  32722016 aacactagcgtccagacgggcactcccgtgcccgtc-gtctactttttctactgcgc 32722071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 2707193 - 2707139
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  2707193 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgct 2707139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 24863912 - 24863966
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||| |||||| |||||||||||||||||| ||||||    
T  24863912 actagcgtccagacgggcactctcgtgcctgtctgtccgctttttctactgcgct 24863966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 31898643 - 31898589
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||||||||||| |||||| |||||| ||||||    
T  31898643 actagcgtccagacgggcactcccgtgcccgtctatccgctctttctactgcgct 31898589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 25417079 - 25417134
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||| |||||| || |||||| ||||||||||||||||| |||||| ||||||    
T  25417079 cactagcgtccagatggacactcctgtgcccgtctgtccgctctttctactgcgct 25417134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 24079567 - 24079513
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||| | |||||||||| ||||||||||||| |||||| ||||||    
T  24079567 actagcgtccagacaggcactcccgtgtccgtctgtccgctctttctactgcgct 24079513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 29406748 - 29406694
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| |||| |||| |||||  |||||||||||||||||||||||| ||||||    
T  29406748 actagcgtccaaacgggcactcatgtgcccgtctgtccgctttttctactgcgct 29406694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 45073821 - 45073858
Alignment:
Q  256 cactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  45073821 cactcccgtgcccgtctgtccgctttttccactgcgct 45073858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 6546 - 6603
Alignment:
Q  236 aacactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||    
T  6546 aacactagcgtccagacgggcactcccgtacccgtctgtccgctttttctactgcgct 6603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 15212735 - 15212791
Alignment:
Q  237 acactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||    
T  15212735 acactagcgtccagatgggcactcccgtgcccgtctgtccgctttttctactgcgct 15212791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 15251954 - 15252010
Alignment:
Q  237 acactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||    
T  15251954 acactagcgtccagatgggcactcccgtgcccgtctgtccgctttttctactgcgct 15252010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 46124027 - 46124082
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  46124027 cactagcgttcagacgggcactcccgtgcccgtctgtccgctttttctactgcgct 46124082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 9767990 - 9767936
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  9767990 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgct 9767936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 11028072 - 11028125
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  11028072 actagcgtccagacgg-cactcccgtgcccgtctgtccgctttttctactgcgct 11028125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 41935300 - 41935248
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcg 291  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||| ||||    
T  41935300 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcg 41935248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 21972645 - 21972692
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  21972645 actagcgtccagacgggcactcccgtgcccgtttgtccgctttttcta 21972692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 21995076 - 21995123
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  21995076 actagcgtccagacgggcactcccgtgcccgtttgtccgctttttcta 21995123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 22155376 - 22155423
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| |||||||||||||||||||||| ||||||||    
T  22155376 actagcgtccagacggacactcccgtgcccgtctgtccgttttttcta 22155423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 53157279 - 53157333
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||| |||||||||||||||||| |||||| ||||||    
T  53157279 actagcgtccagacgggcactctcgtgcccgtctgtccgctctttctactgcgct 53157333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 48119802 - 48119770
Alignment:
Q  261 ccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||||||||||||||||||||||||||||||    
T  48119802 ccgtgcccgtctgtccgctttttctattgcgct 48119770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 6079937 - 6079883
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| | ||||| | |||| |||||||||||||||||||||||||| ||||||    
T  6079937 actagcgttcagaccggcacttccgtgcccgtctgtccgctttttctactgcgct 6079883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 18740925 - 18740871
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| |||| |||||| |||||||||||| |||||| ||||||    
T  18740925 actagcgtccagacgggcacttccgtgcgcgtctgtccgctctttctaatgcgct 18740871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 27258279 - 27258326
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  27258279 actagcatccagacggacactctcgtgcccgtctgtccgctttttcta 27258326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 9456941 - 9456995
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| || |||||| ||||||||| ||||||||||||||||||||||||||||    
T  9456941 actagcgtctagacggacactcccgtacccgtctgtccgctttttctattgcgct 9456995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 39703183 - 39703136
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  39703183 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttcta 39703136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 48644209 - 48644162
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  48644209 actagcgtccagacggacactctcgtgcccgtctgtccgctttttcta 48644162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 1723429 - 1723476
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| ||||||||||||||||||| |||| ||||||    
T  1723429 actagcgtccagacgggcactcccgtgcccgtctgttcgctctttcta 1723476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 13796648 - 13796593
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||| ||||||| | ||||| ||||| |||||||||||| |||||||||||||    
T  13796648 cactagcgtccagacaggcactctcgtgcacgtctgtccgctctttctattgcgct 13796593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 18535662 - 18535717
Alignment:
Q  239 actagcatccagacggtcactcccgtgccc-gtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||||||| ||||||||||| |||||| ||||||    
T  18535662 actagcgtccagacgggcactcccgtgcccggtctgtccgctctttctactgcgct 18535717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 5380168 - 5380130
Alignment:
Q  248 cagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  5380168 cagacgggcactcccgtgcccgtctgtctgctttttcta 5380130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 10206659 - 10206713
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||| | |||| |||||||||||||||||||||||| | ||||||    
T  10206659 actagcgtccagaccggcacttccgtgcccgtctgtccgctttttccactgcgct 10206713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 3568527 - 3568564
Alignment:
Q  256 cactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  3568527 cactcccgtgcccgtctgtccgctctttctactgcgct 3568564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 52596 - 52542
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  52596 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgct 52542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 23120522 - 23120576
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  23120522 actagcgtccagacggacactcccgtgcccatctgtccgctttttctactgcgct 23120576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 43974870 - 43974816
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| |||||||||| |||| |||||||| |||||||||||||    
T  43974870 actagcgtccagacgggcactcccgtgtccgtttgtccgctctttctattgcgct 43974816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 8223730 - 8223777
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| ||||||||||||| |||||||||| ||||||    
T  8223730 actagcgtccagacgggcactcccgtgcccttctgtccgctctttcta 8223777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 21349405 - 21349452
Alignment:
Q  246 tccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||||  |||||||||||||||||||||||| |||||| ||||||    
T  21349405 tccagacgtacactcccgtgcccgtctgtccgctctttctactgcgct 21349452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 22216422 - 22216477
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||| ||||||||| |||||||||  | ||||||||| |||||||||||||||    
T  22216422 cactagcgtccagacgggcactcccgtatctgtctgtccgttttttctattgcgct 22216477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 45537383 - 45537336
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| ||||||||| |||||| |||||||||||| |||||||||||    
T  45537383 actagcgtccagacgggcactcctgtgcccgtctgttcgctttttcta 45537336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 508262 - 508316
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||| || ||||||    
T  508262 actagcgtccagacgggcactctcgtgcccgtctgtccgcattttttactgcgct 508316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 13586370 - 13586328
Alignment:
Q  244 catccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||    
T  13586370 catccagacgggcactcccgtgcccgtctgtctgctctttcta 13586328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 16047164 - 16047110
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| |||| ||||||| ||||||||||| |||||| ||||||    
T  16047164 actagcgtccagacgggcacttccgtgcctgtctgtccgctctttctactgcgct 16047110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 44337302 - 44337331
Alignment:
Q  263 gtgcccgtctgtccgctttttctattgcgc 292  Q
    ||||||||||||||||||||||||||||||    
T  44337302 gtgcccgtctgtccgctttttctattgcgc 44337331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 13505303 - 13505335
Alignment:
Q  261 ccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||||||||||||||||||||    
T  13505303 ccgtgctcgtctgtccgctttttctattgcgct 13505335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 15723349 - 15723295
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  15723349 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgct 15723295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 44201732 - 44201676
Alignment:
Q  237 acactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||||| || |||||| |||||||||||||||||||||||| |||||| ||||||    
T  44201732 acactagcgtctagacgggcactcccgtgcccgtctgtccgctctttctactgcgct 44201676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 46351885 - 46351944
Alignment:
Q  234 tcaacactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||| |||||| ||||||||  ||||||||||||| |||||||||| |||||||||||||    
T  46351885 tcaatactagcgtccagacgagcactcccgtgcccatctgtccgctctttctattgcgct 46351944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 19193876 - 19193811
Alignment:
Q  228 tattattcaacactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||| || |||||| ||||||||| |||||| ||||| ||||||||||| |||||| ||||||    
T  19193876 tattattgaagactagcgtccagacgggcactcctgtgcctgtctgtccgctctttctactgcgct 19193811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 2248044 - 2248096
Alignment:
Q  241 tagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||| ||||||||| |||||||||| ||||||||||||| |||||| ||||||    
T  2248044 tagcgtccagacggacactcccgtgtccgtctgtccgctctttctactgcgct 2248096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 46123066 - 46123012
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||||| ||||||||||||||||||| ||| |||| || ||||||    
T  46123066 actagcgtccagacgggcactcccgtgcccgtctgttcgcattttttactgcgct 46123012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 84296 - 84243
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgc 292  Q
    |||||| || |||||| ||||||||||||| |||||||||||||||||||||||    
T  84296 actagcgtcgagacgggcactcccgtgcccatctgtccgctttttctattgcgc 84243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 102232 - 102285
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgc 292  Q
    |||||| ||||||||| ||||||||||||||| |||||||| |||||| |||||    
T  102232 actagcgtccagacgggcactcccgtgcccgtttgtccgctctttctactgcgc 102285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 38601 - 38656
Alignment:
Q  238 cactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||||||||||||| |||||||||| |||||||||  ||||||||| ||||||    
T  38601 cactagcatccagacgggcactcccgtgtccgtctgtcaactttttctactgcgct 38656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 10431 - 10394
Alignment:
Q  249 agacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10431 agacgggcactcccgtgcccgtctgtccgctttttcta 10394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 21693 - 21754
Alignment:
Q  225 tgttattattcaacactagcatccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    ||||||||||  | |||||||||||||||| |||||||||||||   |||||||||||||||    
T  21693 tgttattatttgaaactagcatccagacgggcactcccgtgcccagttgtccgctttttcta 21754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 29284 - 29244
Alignment:
Q  246 tccagacggtcactcccgtgcccgtctgtccgctttttcta 286  Q
    ||||||||| |||||||||| ||||||||||||| ||||||    
T  29284 tccagacgggcactcccgtgtccgtctgtccgctctttcta 29244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 28500 - 28446
Alignment:
Q  239 actagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||||| ||||||| | ||||||| ||||||||| ||||||||||||| ||||||    
T  28500 actagcgtccagacaggcactcccatgcccgtctatccgctttttctactgcgct 28446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 42510 - 42477
Alignment:
Q  260 cccgtgcccgtctgtccgctttttctattgcgct 293  Q
    ||||||||||||||||||||||||||| ||||||    
T  42510 cccgtgcccgtctgtccgctttttctagtgcgct 42477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 4647 - 4591
Alignment:
Q  237 acactagcatccagacggtcactcccgtgcccgtctgtccgctttttctattgcgct 293  Q
    |||| ||| |||||||||  |||||||||||||||||||| || |||||| ||||||    
T  4647 acaccagcgtccagacgggtactcccgtgcccgtctgtccactctttctactgcgct 4591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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