View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19814_low_1 (Length: 866)
Name: NF19814_low_1
Description: NF19814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19814_low_1 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 259 - 866
Target Start/End: Original strand, 10001613 - 10002210
Alignment:
| Q |
259 |
tattagtaatgtatcttacgattcataataagattcaaataccgcgattcagaaaatagttcttttgattcacgatacgaatctc-aatgctcatagtaa |
357 |
Q |
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| T |
10001613 |
tattagtaatgcatcttacgattcataataagattcgattacc-----------aatagttatttcgattcatgatacgaatctctaatgctcatattaa |
10001701 |
T |
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| Q |
358 |
ggaggggtaatgtagagcagtaaaatcactaaccttagtttcaggatcattcaactcaaccaataattctgcaacagtatctttacaaaagccacaacta |
457 |
Q |
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| T |
10001702 |
ggaggggtaatgtagagcagtaaaatcactaaccttagtttcaggatcattcaactcaactaataattctgcaacagtatctttacaaaagccacaacta |
10001801 |
T |
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| Q |
458 |
tttccatgaacctgtgaagaaatcgttgcagactcacaaaggtggtacttttcacagagttctgcaggcatcattcgagctatttttgagaagaaaagtt |
557 |
Q |
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| T |
10001802 |
tttccatgaacctgtgaagaaatcgttgcagactcacaaaggtggtacttttcacagagttctgcaggcatcattcgagctatttttgagaagaaaagtt |
10001901 |
T |
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| Q |
558 |
ggacatgatggtccaccaattcaaagcactgtacaatgtgcaatacaaaataaacagagatgagttaaaaataaggcttgataagttcttattccttcac |
657 |
Q |
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| T |
10001902 |
gaacatgatggtccaccaattcaaagcactgtacaatgtgcaatacaaaacaaacagagatgagttaaaaataaggcttgataagttcttattccttcac |
10002001 |
T |
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| Q |
658 |
aattctacactataagttcgttaaatttgacggtaattgttcaacttgtatgactttaatcactaatcattcaattttttcaagttttaacaatcaaaat |
757 |
Q |
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| T |
10002002 |
aattctacactataagttcgttaaatttgacggtaattgttcaacttgtatgactttaatcactaatcattcaattttttcaagttttaccaatgaaaat |
10002101 |
T |
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| Q |
758 |
tcaaagctcaattcaacaaaaactaagctgcttattcaggttataagaaactgctaacatggtcgtctgttcacttttctcgataaaaataatggaaatt |
857 |
Q |
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| T |
10002102 |
tcaaaggtcaattcaacaaaaactaagctgcttattcaggttataagaaactgctaacatggtcgtctgttcacttttctcgataaaaataatggaaatt |
10002201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 10000291 - 10000401
Alignment:
| Q |
11 |
agaacctgtgaaacttctgagtcatggtttaattggttaaaatatgcaacaaatataccggttcaaccaaccctggttgaaatggttcagccccgattca |
110 |
Q |
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| T |
10000291 |
agaaccggtgaaacttctgagtcatgatttaattggttaaaatatgcagcgaatacaccggttcaaccaactc-ggttgaaatggttcagtcccgattca |
10000389 |
T |
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| Q |
111 |
atccggttcaac |
122 |
Q |
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| T |
10000390 |
atccggttcaac |
10000401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 10001059 - 10001145
Alignment:
| Q |
178 |
acctccttcttatacttctccatattattgcatgcctttagtagtttctgaattatctctagctgtcattttataataaagtattag |
264 |
Q |
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| T |
10001059 |
acctccttcttatacttctccatattgttgcatgccttcagtagtttctgaattatctctagctgtcattttataataaagttttag |
10001145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 38909308 - 38909276
Alignment:
| Q |
266 |
aatgtatcttacgattcataataagattcaaat |
298 |
Q |
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| T |
38909308 |
aatgtatcttacgattcataataagattcaaat |
38909276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 7295705 - 7295740
Alignment:
| Q |
259 |
tattagtaatgtatcttacgattcataataagattc |
294 |
Q |
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| T |
7295705 |
tattagtaatgtatcttacaattcataataagattc |
7295740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 822 - 854
Target Start/End: Complemental strand, 12017255 - 12017223
Alignment:
| Q |
822 |
gtctgttcacttttctcgataaaaataatggaa |
854 |
Q |
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| T |
12017255 |
gtctgttcacttttctcgataaaaataatggaa |
12017223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 2402709 - 2402743
Alignment:
| Q |
259 |
tattagtaatgtatcttacgattcataataagatt |
293 |
Q |
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| T |
2402709 |
tattagtaatgtatcttacgattcatagtaagatt |
2402743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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