View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19814_low_11 (Length: 250)
Name: NF19814_low_11
Description: NF19814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19814_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 28851921 - 28852120
Alignment:
| Q |
12 |
aagaacaagaaagaacggtaccaggaggagttagaggagcgcattgtgtcgcttgttgcttcattatttggtaagcaggcaagtcaagtttcatttgagt |
111 |
Q |
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| T |
28851921 |
aagaacaagaaagaacggtaccaggaggagttagaggagcgcattgtgtcgcttgttgcttcattgtttggtaagcaggcaagtcaagtttcatttgagt |
28852020 |
T |
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| Q |
112 |
tttgacataatatgtgtacacaccgacactgtactgtacttttcccttatctgttatgtgatattgaacttcagtaatatatatactttaccattggtat |
211 |
Q |
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| T |
28852021 |
tttgacataatatgtgtacacaccgacgctgtactgtacttttcccttatctgttatgtgatattgaacttcagtaatatatatactttaccattggtat |
28852120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 28852121 - 28852152
Alignment:
| Q |
180 |
cttcagtaatatatatactttaccattggtat |
211 |
Q |
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| T |
28852121 |
cttcagtaatatatatactttaccattggtat |
28852152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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