View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19814_low_12 (Length: 236)
Name: NF19814_low_12
Description: NF19814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19814_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 28852384 - 28852165
Alignment:
| Q |
17 |
catgcacattgcgtctaactaatgcatatttcaattcacgcatggattcacttgatgtcactttgcaaagtattagtctgtatattagggacgattcaag |
116 |
Q |
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| T |
28852384 |
catgcgcattgcgtctaactaatgcatatttcaattcacgcatggattcacttgatgtcactttgcaaagtattagtctgtatattagggacgattcaag |
28852285 |
T |
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| Q |
117 |
gaaagttgaatatgatgtatccatccctgtattagatagttctatcatctaaggtttttcattgtatgaaaataaaaatataagcttgtctatcttctca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28852284 |
gaaagttgaatatgatgtatccatccctgtattagatagttctatcatctaaggtttttcattgtatgaaaataaaaatataagcttgtctatcttcaca |
28852185 |
T |
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| Q |
217 |
ctcatttccaacaagttaac |
236 |
Q |
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|||||||||||||||||||| |
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| T |
28852184 |
ctcatttccaacaagttaac |
28852165 |
T |
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