View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19814_low_5 (Length: 402)
Name: NF19814_low_5
Description: NF19814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19814_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 34336838 - 34336555
Alignment:
| Q |
13 |
tgaatgcagcaaaatcttacactgatactttgttcattttggtggggaaaagtcaccaaaaataaaattggtagggaaaagagaggaagaataattcata |
112 |
Q |
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| T |
34336838 |
tgaatgcagcaaaatcttacactgatactttgttcattttggtggggaaaagtcaccaaaaataaaattggtagggaaaagagaggaagaataattcata |
34336739 |
T |
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| Q |
113 |
gcatggtgcataaacaattatcnnnnnnnnnnnnttcatgctacataaataaatttttactgaatgctggcaaaacactctaataatactagtatttttt |
212 |
Q |
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| T |
34336738 |
gcatggtgcataaacaattatcaaaaaataaaaattcatgctacataaataaatttttactgaatgctggcaaaacactctaataatactagtatttttt |
34336639 |
T |
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| Q |
213 |
aatgtaatgattataatattttaatacgaatattttaaagtttaaagtagttaatagcatatgcatgaacttctgtgctctgag |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34336638 |
aatgtaatgattataatattttaatacgaatattttaaagtttaaagtagttaatagcatatgcatgaacttctgtgctctgag |
34336555 |
T |
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