View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19814_low_8 (Length: 337)
Name: NF19814_low_8
Description: NF19814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19814_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 24145998 - 24145866
Alignment:
| Q |
72 |
agatcattctaggtggtgctaaacttaaatatttttacttcttaatggctaagtaatttacatagacggttataaactattctaggtggttctacatatg |
171 |
Q |
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| T |
24145998 |
agatcattctaggtggttctacacttagacatttttacttcttaatggctaagtaatttacataggcggttataaactattctaggtgattctac--atg |
24145901 |
T |
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| Q |
172 |
tctttttattttatttaatgactaatcataatcta |
206 |
Q |
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| T |
24145900 |
tctttttattttacttaatgactaatcataatcta |
24145866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 24151634 - 24151516
Alignment:
| Q |
100 |
atatttttacttcttaatggctaagtaatttacatagacggttataaactattctaggtggttctacatatgtctttttattttatttaatgactaatca |
199 |
Q |
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| T |
24151634 |
atatttttacttcttaatggctaagaaatttacataggcggttataaactattctaggtggttctac--atgtctttttattttacttaatgactaatca |
24151537 |
T |
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| Q |
200 |
taatctaataataaactaagt |
220 |
Q |
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| T |
24151536 |
taatctagtattagactaagt |
24151516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 241 - 327
Target Start/End: Original strand, 27132302 - 27132387
Alignment:
| Q |
241 |
aattattttagatagttcttgatttaacttctaataggatgcattagtgaaaatatgaaaactagttaaagatatggatttcctttg |
327 |
Q |
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| T |
27132302 |
aattattctaaatagttcttgatttaacttctaacaagatgcattagtgaaaatatgaaaactagctaaa-atatggatttcctttg |
27132387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 27132097 - 27132153
Alignment:
| Q |
18 |
aaaaccaattaacttgtgcatg--tttttctaatcttaataataattcatttcatta |
72 |
Q |
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| T |
27132097 |
aaaaccaattaacttgtgcatgtttttttttaatcttagtaatagttcatttcatta |
27132153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 7490564 - 7490701
Alignment:
| Q |
147 |
actattctaggtggttctacatatgtctttttattttatttaatgactaatcataatct----------aataataaactaagtcaaactttgcatcccc |
236 |
Q |
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| T |
7490564 |
actattctaggtggttctgcatatttctttttattttacttagtgactaatcataatctttaataggcaagtaatagactaagtcaaactttgcatccct |
7490663 |
T |
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| Q |
237 |
tctaaattattttagatagttcttgatttaacttctaa |
274 |
Q |
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| T |
7490664 |
tctccattattctagatagttgttgatttaatttctaa |
7490701 |
T |
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