View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19815_low_1 (Length: 414)
Name: NF19815_low_1
Description: NF19815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19815_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 44321704 - 44321333
Alignment:
| Q |
1 |
aagaaaatgacaagataaagggtataaatctgtccctctatgtatatagtgccagtatcaaataacacaatcagcatttatgaaatcttaatactcacac |
100 |
Q |
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| T |
44321704 |
aagaaaatgacaagataaagggtataaatctgtccctctatgtatatagtgccagtatcaaataacacaatcagcatttatgaaatcttaatactcacac |
44321605 |
T |
|
| Q |
101 |
tgcttaataattttaagtagaatatgaaatgaattcctatccctgaagtcaaaattctaacgagtataccagtcttataaaatttcatgtcaatcaaaat |
200 |
Q |
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| T |
44321604 |
tgcttaataattttaagtagaatatgaaatgaattcctatccctgaagtcaaaattctaacgagtatactagtcttataaaatttcatgtcaatcaaaac |
44321505 |
T |
|
| Q |
201 |
gcgttgataattaatttactaatttttcatctcgtaacaat-nnnnnnnctaatctttcatgaagattagattaaaagaatgatgagttaagatgagagg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44321504 |
gcgttgataattaatttactaatttttcatctcgtaacaataaaaaaaactaatctttcatgaagattagattaaaagaatgatgagttaagatgagagg |
44321405 |
T |
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| Q |
300 |
tctgaattatgattaccaatctataacttatcaggtagtgttaggcacttggccttaaaattctggcatagt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44321404 |
tctgaattatgattaccaatctataacttatcaggtagtgttaggcacttggccttaaaattctggcatagt |
44321333 |
T |
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