View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19815_low_2 (Length: 387)
Name: NF19815_low_2
Description: NF19815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19815_low_2 |
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| [»] scaffold1108 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 20562656 - 20562876
Alignment:
| Q |
8 |
aagcataggaacatgtgcggatgcatcaaaatatgtattctgggatagttttcatcccacagaagctacaaataagattatgatggatcatttgattcct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20562656 |
aagcataggaacatgtgcggatgcatcaaaatatgtattctgggatagttttcatcccacagaagctataaataagattatgatggatcatttgattcct |
20562755 |
T |
|
| Q |
108 |
gctgcaacctcccttttatattctaaccagacagttcgctagaagttattttgtacaaaacaggcaaggaatgcttagctttaggtttgttaactgataa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20562756 |
gctgcaacctcccttttatattctaaccagacagttcgctagaagtcattttgtacaaaacaggcaaggaatgcttagctttaggtttgttaactgataa |
20562855 |
T |
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| Q |
208 |
ggaggttttggtctaatcccc |
228 |
Q |
| |
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||||||||||||||||||||| |
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| T |
20562856 |
ggaggttttggtctaatcccc |
20562876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 20594523 - 20594736
Alignment:
| Q |
8 |
aagcataggaacatgtgcggatgcatcaaaatatgtattctgggatagttttcatcccacagaagctacaaataagattatgatggatcatttgattcct |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20594523 |
aagcataggaacatgtgcggatgcatcaaaatatgtattctgggatagttttcataccacagaagctacaaataagattttgatggatcatttgattcct |
20594622 |
T |
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| Q |
108 |
gctgcaacctcccttttatattctaaccagacagttcgctagaagttattttgtacaaaacaggcaaggaatgcttagctttaggtttgttaactgataa |
207 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| |||||| ||||||||||||||||| |
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| T |
20594623 |
actgcaacctcacttttatattctaaccagacagttcgctagaagtcattttgtacaaaatagataaggaatg---agcttttggtttgttaactgataa |
20594719 |
T |
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| Q |
208 |
ggaggttttggtctaat |
224 |
Q |
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||||||||||||||||| |
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| T |
20594720 |
ggaggttttggtctaat |
20594736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 268 - 375
Target Start/End: Original strand, 20562915 - 20563023
Alignment:
| Q |
268 |
aatatatttggg-cagtgtagctctctgcactatctttttggttaaaaaatattatctaaccagatagttcgctagtcaatacttttcattaatttagtt |
366 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20562915 |
aatatatttggggcagtgtagctctccgcactatctttttggttaaaaaatattatctaaccagatagttcgctagtcaatacttttcattaatttagtt |
20563014 |
T |
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| Q |
367 |
tggtatgat |
375 |
Q |
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||||||||| |
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| T |
20563015 |
tggtatgat |
20563023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 20603756 - 20603896
Alignment:
| Q |
8 |
aagcataggaacatgtgcggatgcatcaaaatatgtattctgggatagttttcatcccacagaagctacaaataagattatgatggatcatttgattcct |
107 |
Q |
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|
|||||||||||| || | |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
20603756 |
aagcataggaacttgcgtcgatgcatcaaaatatgtattctggaatagttttcatcccacagaggctacaaataagattttgatggatcatttgattcct |
20603855 |
T |
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| Q |
108 |
gctgcaac--ctcccttttatattctaaccagacagttcgc |
146 |
Q |
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|||||||| ||||||| ||||||||||||| | ||||||| |
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| T |
20603856 |
gctgcaacctctcccttatatattctaaccataaagttcgc |
20603896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 13099595 - 13099690
Alignment:
| Q |
15 |
ggaacatgtgcggatgcatcaaaatatgtattctgggatagttttcatcccacagaagctacaaataagattatgatggatcatttgattcctgct |
110 |
Q |
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||||||||||| ||||||| | |||||||| ||||||||||| ||||||||| |||||||||| ||| || |||| |||| ||||||||||||| |
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| T |
13099595 |
ggaacatgtgcaaatgcatctgagtatgtattttgggatagtttgcatcccacacaagctacaaacaagtttttgatagatcgtttgattcctgct |
13099690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1108 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: scaffold1108
Description:
Target: scaffold1108; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 1258 - 1478
Alignment:
| Q |
8 |
aagcataggaacatgtgcggatgcatcaaaatatgtattctgggatagttttcatcccacagaagctacaaataagattatgatggatcatttgattcct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1258 |
aagcataggaacatgtgcggatgcatcaaaatatgtattctgggatagttttcatcctacagaagctacaaataagattttgatggatcatttgattcct |
1357 |
T |
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| Q |
108 |
gctgcaacctcccttttatattctaaccagacagttcgctagaagttattttgtacaaaacaggcaaggaatgcttagctttaggtttgttaactgataa |
207 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| || |||||||| |||||||||||||||||| ||||| |
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| T |
1358 |
gctgcaacctcgcttttatattctaaccaaacagttcgctagaagtcattttgtacaaaatagataaggaatg---agctttaggtttgttaaccgataa |
1454 |
T |
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| Q |
208 |
ggaggttttggtctaatccccctc |
231 |
Q |
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|||||||||||||||||||||||| |
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| T |
1455 |
ggaggttttggtctaatccccctc |
1478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1108; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 1529 - 1625
Alignment:
| Q |
279 |
gcagtgtagctctctgcactatctttttggttaaaaaatattatctaaccagatagttcgctagtcaatacttttcattaatttagtttggtatgat |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
1529 |
gcagtgtagctctctgcactatctttttggttaaaaaatattatctaaccagatagttccctagtgaatacttttcattaatttagtttggtatgat |
1625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 17839875 - 17840010
Alignment:
| Q |
9 |
agcataggaacatgtgcggatgcatcaaaatatgtattctgggatagttttcatcccacagaagctacaaataagattatgatggatcatttgattcctg |
108 |
Q |
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|
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| || | ||||||| ||||||||||| |
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| T |
17839875 |
agcataggaacatgtgtagatgcctcaaaatatgtattctaggatagttttcatcccacagaggctacaaataagtttttaatggatcgtttgattcctg |
17839974 |
T |
|
| Q |
109 |
ctgcaacctcccttttatattctaaccagacagttc |
144 |
Q |
| |
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|||| ||||||||| |||||||||| |||| ||||| |
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| T |
17839975 |
ctgcgacctcccttatatattctaatcagaaagttc |
17840010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 35789585 - 35789513
Alignment:
| Q |
11 |
cataggaacatgtgcggatgcatcaaaatatgtattctgggatagttttcatcccacagaagctacaaataag |
83 |
Q |
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||||||||| |||||| ||||| | |||||||||||||||| ||||||||||| | || ||| |||||||| |
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| T |
35789585 |
cataggaacgtgtgcgaatgcaactgaatatgtattctgggacggttttcatccctctgaggctgcaaataag |
35789513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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