View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19816_high_6 (Length: 327)
Name: NF19816_high_6
Description: NF19816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19816_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 198 - 308
Target Start/End: Complemental strand, 22996565 - 22996457
Alignment:
| Q |
198 |
acatattatgtaatgcagctggtctaagattcaaaccgtctcgttaaaatgaaatagagctaactgttgatgtgtaagttattaataatgaataaatcca |
297 |
Q |
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| T |
22996565 |
acatatcatgtaatgcagctgatctaagattcaaaccgtctcgttaaaatgaaatagagctatctattga--tgtaagttattaataatgaataaatcca |
22996468 |
T |
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| Q |
298 |
aataacttatt |
308 |
Q |
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||||||||||| |
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| T |
22996467 |
aataacttatt |
22996457 |
T |
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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 37559103 - 37559178
Alignment:
| Q |
55 |
gtatataatacaaacttgaaattccacacgccatggacaaactatgcattgatgtttttgatttatatgttgaata |
130 |
Q |
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| T |
37559103 |
gtatataatacaaacttgagattccacacgccatggacaaactatgcatgcatgtttctgatttatatgttgaata |
37559178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 21359600 - 21359502
Alignment:
| Q |
14 |
gctgttgcaatcttgtcttcactacctgca-aaaagcatcaggtatataatacaaacttgaaattccacacgccatggacaaactatgcattgatgttt |
111 |
Q |
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|||| ||||||||| ||||||| ||||||| |||| || ||||||||||||||| |||| |||||||| |||| ||||||||||||||| ||||||| |
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| T |
21359600 |
gctgctgcaatcttatcttcaccacctgcagaaaaacacaaggtatataatacaagcttgggattccacatgccaaggacaaactatgcatggatgttt |
21359502 |
T |
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