View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19817_high_1 (Length: 637)
Name: NF19817_high_1
Description: NF19817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19817_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 624
Target Start/End: Complemental strand, 25554003 - 25553389
Alignment:
| Q |
16 |
tattattggtagccatattgagtatattgaccagaaacttttccctcattacaaggtttggtttcttttttggacacacacacatgtttacactttaaac |
115 |
Q |
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| T |
25554003 |
tattattggtagccatattgagtatattgaccagaaacttttccctcattacaaggtttggtttcttttttggacacacaca--tgtttacactttaaac |
25553906 |
T |
|
| Q |
116 |
acatgacatgcttgttttgagtcatt---tgacgaaatcatgatgacaccctcannnnnnn---aagttctaatgtgtagtttttgtcaagattattatg |
209 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||| |
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| T |
25553905 |
acatgacatgcttgttttgaatcattgtttgacgaaatcatgatgacaccttcgtttttttttgaagctctaaagtgtagtttttgtcaagattattatg |
25553806 |
T |
|
| Q |
210 |
gatctccttttgtcaactagcgactaaaaataaatctcagctctccgattttgatcaataattttaannnnnnn-ccaagtgtgtctgcattattgtcca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
25553805 |
gatctccttttgtcaactagcgactaaaaataaatctcagctctccgattttgatcaataattttaattttttttccgagtgtgtctgcattattgtcca |
25553706 |
T |
|
| Q |
309 |
atttcacggttta-tactacggttttgaatcatcgatcaataattttaaatttattttctatatgatttttatgcattaatactggtatatatactacgg |
407 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25553705 |
atttcacggtttaatactacggttttgaatcatcgatcaataattttaaatttattttctatatgatttttatgcattaatactggtatatatactacgg |
25553606 |
T |
|
| Q |
408 |
ttcttgattgtagggaatgcgtgtcccaaaatcactgtggcacgttgtgattatgtcaaactcactttaaattcaaacacacttcatgnnnnnnnnngtc |
507 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25553605 |
ttcttgattgtagggaatgcatgtcccaaaatcactgtggcacgttgtgattatgtcaaactcactttaaattcaaacacacttcatgtttttttttttg |
25553506 |
T |
|
| Q |
508 |
taaaaataaaactttttgtgatcttgtttctctatttttgcagaaagtttgctttatgttaagttctgatgaaaggagaaattggcgtgcattaccaaaa |
607 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25553505 |
tctaaataaaactttttgtgatcttgtttctctatttttgcagaaagtttgctttatgttaagttctgatgaaaggagaaattggcgtgcattaccaaaa |
25553406 |
T |
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| Q |
608 |
aagttgtttcctaagcc |
624 |
Q |
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||||||||||||||||| |
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| T |
25553405 |
aagttgtttcctaagcc |
25553389 |
T |
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