View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19817_high_2 (Length: 329)
Name: NF19817_high_2
Description: NF19817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19817_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 8665330 - 8665596
Alignment:
| Q |
23 |
gaatgagcttaaagggccataacattagatcattttgaataattagattgctatagttccttaacatggaaggcatgtccaatgtctgaaatatgttatt |
122 |
Q |
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| T |
8665330 |
gaatgagcttagagggccataacattagatcattgtgaatagttggatcactatagttccttgacatggaaggcatgtccaatgtctgaaacatgttatt |
8665429 |
T |
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| Q |
123 |
gttcgacaccggcatggtaccgatatatatggctacttttaatcacttttaccttttcagtgtcaaggctgtgtgtcaaatgtccattagttcactgtgc |
222 |
Q |
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| T |
8665430 |
gttctacaccggcgggct---gttatatgtgcctgattttaatcacttttactttttcagtgtgagggctgtgtgtcaaatgtctgttggttcgttgtgc |
8665526 |
T |
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| Q |
223 |
atgatctcagccatattagtttgaccctaccatattagctacacatgagtaggttgtgccaaggtcaattc |
293 |
Q |
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| T |
8665527 |
atgatctcagccagattagtttgaccctaccata-tagctacatacgagtaggttgtgcgaaggtcaattc |
8665596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 8673005 - 8672891
Alignment:
| Q |
22 |
tgaatgagcttaaagggccataacattagatcattttgaataattagattgctatagttccttaacatggaaggcatgtccaatgtctgaaatatgttat |
121 |
Q |
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| T |
8673005 |
tgaatgagcttagagggccataacattagataattctgagtaattggatcgttatacttccttgaaatcgaaggcatgtctaatgtctgaaacgtgttat |
8672906 |
T |
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| Q |
122 |
tgttcgacaccggca |
136 |
Q |
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| T |
8672905 |
tgttcgacaccggca |
8672891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 295
Target Start/End: Complemental strand, 8672879 - 8672787
Alignment:
| Q |
202 |
atgtccattagttcactgtgcatgatctcagccatattagtttgaccctaccatattagctacacatgagtaggttgtgccaaggtcaattcca |
295 |
Q |
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| T |
8672879 |
atgtctattagttcattgtgcatgatctcagccagattagtttgaccctgccata-tagctacacatgagtaggttttgccagggccaattcca |
8672787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 8663126 - 8663230
Alignment:
| Q |
97 |
atgtccaatgtctgaaatatgttattgttcgacaccggcatggtaccgatatatatggctacttttaatcacttttaccttttcagtgtcaaggctgtgt |
196 |
Q |
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| T |
8663126 |
atgttcaatgtctgccacatgttattgttcgacaccggcatgataccaatatatgtgactacctttaattgcttttactttttcagtgtcagggctgtgt |
8663225 |
T |
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| Q |
197 |
gtcaa |
201 |
Q |
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||||| |
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| T |
8663226 |
gtcaa |
8663230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 8663232 - 8663271
Alignment:
| Q |
218 |
tgtgcatgatctcagccatattagtttgaccctaccatat |
257 |
Q |
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| T |
8663232 |
tgtgcatgatctcagccaaattagtttgaccataccatat |
8663271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 8663376 - 8663413
Alignment:
| Q |
258 |
tagctacacatgagtaggttgtgccaaggtcaattcca |
295 |
Q |
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| T |
8663376 |
tagccacacatgagtaggttatgccaaggtcaattcca |
8663413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 8560825 - 8560857
Alignment:
| Q |
263 |
acacatgagtaggttgtgccaaggtcaattcca |
295 |
Q |
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| T |
8560825 |
acacatgagtaggttgttccaaggtcaattcca |
8560857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 9337652 - 9337497
Alignment:
| Q |
18 |
attatgaatgagcttaaagggccataacattagatcattttgaataattagattgctatagttccttaacatggaaggcatgtccaatgtctgaaatatg |
117 |
Q |
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| T |
9337652 |
attatgaatgagcttaaagggccataacattagatcattctgaataattggatcgctatagttccttaacatcgaaggcatgtccaatgtctgaaatatg |
9337553 |
T |
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| Q |
118 |
ttattgttcgacaccggcatggtaccgatatatatggctacttttaatcactttta |
173 |
Q |
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| T |
9337552 |
ttattgttcgacaccagcatggtaccaatatatgtggctacttttaatcactttta |
9337497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 9337499 - 9337432
Alignment:
| Q |
257 |
ttagctacacatgagtaggttgtgccaaggtcaattccatataattaagagaatgaattcatctcact |
324 |
Q |
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| T |
9337499 |
ttagctgcatatgagtaggttgtgccaaggtcaattccatataattaagagaatgaattaatgtcact |
9337432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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