View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19817_low_2 (Length: 335)
Name: NF19817_low_2
Description: NF19817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19817_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 1503159 - 1503471
Alignment:
| Q |
8 |
aaatggctctttatttcctctagtggatcacaaggaagttgtttttaccctttctcttgtttttgtttgaacagtnnnnnnnnnnnncctttttaattaa |
107 |
Q |
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| T |
1503159 |
aaatggctctttatttcccctagtggatcacaaggaagttgtttttaccctttctcttgtttttgtttgaacagtaaaaaaaaaaa-ccttttcaattaa |
1503257 |
T |
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| Q |
108 |
ctcacttgnnnnnnnnnnnnnnnaaccttttcctaagaaagcttttagtccttcaccaaatttgcaagccatcataaatttgattttattatttccctat |
207 |
Q |
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| T |
1503258 |
ctcacttgtttttcattttttttaaccttttcctaagaaagcttttagtccttcaccaaatttgcaagccatcataaatttgattttattatttccctat |
1503357 |
T |
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| Q |
208 |
gcatctaagctgattcatacaaaacaacaaaaaacgagaaatgtgtcttaccatatggtaaaagttagttatctgcatagaagaaatgtagtttataaat |
307 |
Q |
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| T |
1503358 |
gcatctaagctgattcatacaaaacaacaaaaaacgagaaatgtgtcttaccatatggtcaaagttagttatttgcatagaagaaatgtagtttataaat |
1503457 |
T |
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| Q |
308 |
ttagttatacctaa |
321 |
Q |
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| T |
1503458 |
ttagttatacctaa |
1503471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 1508547 - 1508623
Alignment:
| Q |
131 |
aaccttttcctaagaaagcttttagtccttcaccaaatttgcaagccatcataaatttgattttattatttccctatg |
208 |
Q |
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| T |
1508547 |
aaccttttcctaacaaagcttt-atttgttcaccaaatttacaagctatcataaattgaactttattatttccctatg |
1508623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 1508628 - 1508693
Alignment:
| Q |
252 |
gtcttaccatatggtaaaagttagttatctgcatagaagaaatgtagtttataaatttagttatacc |
318 |
Q |
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| T |
1508628 |
gtcttactctatggtcaaagtttgttatgtacatagaagaaatgta-tctataaatttagttatacc |
1508693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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