View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19817_low_5 (Length: 274)
Name: NF19817_low_5
Description: NF19817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19817_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 35094141 - 35093886
Alignment:
| Q |
1 |
atcatagaatataagtttaatatttttcgcaccttttccttttacaatttccgaaaaaagatctaaatgttaaaaaatgtattgtatattttcctcactt |
100 |
Q |
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| T |
35094141 |
atcagagaatataagtttaatatttttcgcaccttttccttttacaatttccgaaaaaagatctaaatgttaaaaaatgtattgtatattttcctcacat |
35094042 |
T |
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| Q |
101 |
ttttccttttacaactaataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaatacaggataccattctataggacag |
200 |
Q |
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| T |
35094041 |
ttttccttttacaactaataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaatacaggataccattctataggacag |
35093942 |
T |
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| Q |
201 |
gaaagccttgactggccaagcaggttgaagatagtgaaaggtgtagcgaaagggat |
256 |
Q |
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| T |
35093941 |
gaaagccttgactggccaagcaggttgaagatagtgaaaggtgtagcgaaagggat |
35093886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 34239772 - 34239714
Alignment:
| Q |
117 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaa |
175 |
Q |
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| T |
34239772 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaa |
34239714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 40620 - 40563
Alignment:
| Q |
117 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatcta |
174 |
Q |
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|||||| ||||||||| |||| ||| ||||||||||||||||| ||||||||||||| |
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| T |
40620 |
aataaggcttatatagtcaattagattaactaactagtgtaacttacttttacatcta |
40563 |
T |
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