View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19818_high_3 (Length: 244)
Name: NF19818_high_3
Description: NF19818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19818_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 49054704 - 49054492
Alignment:
| Q |
18 |
gttacatcactacgaaaattgttgtagatcattgtaatatcccgtttttcaaataaaatgtttttctacttgatgcaagggtatagcacataggttgcac |
117 |
Q |
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| T |
49054704 |
gttacatcactacgaaaattgttgtagatcattgtaatatcccgtttttcaaataaaatgtttttctacttgatgcaagggtatagcacataggttgcac |
49054605 |
T |
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| Q |
118 |
ataccacctttacacactcaatacattatgctacttaaattgatttttggtgatttgtgaggagcaaacacttgtctcctcctcaaataatttcctctat |
217 |
Q |
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| T |
49054604 |
ataccacctttacacactcaatacattatgctacttaaattgatttttggtgatttgtgaggagcaaacacttgtctcctcctcaaataatttcctctat |
49054505 |
T |
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| Q |
218 |
ttcatcacctttg |
230 |
Q |
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|||||||| |||| |
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| T |
49054504 |
ttcatcacttttg |
49054492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 49056095 - 49056051
Alignment:
| Q |
177 |
aggagcaaacacttgtctcctcctcaaataatttcctctatttca |
221 |
Q |
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| T |
49056095 |
aggaccaaacacttgtctcctcctcaaataatttcctctatttca |
49056051 |
T |
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