View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19818_low_2 (Length: 561)

Name: NF19818_low_2
Description: NF19818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19818_low_2
NF19818_low_2
[»] chr8 (1 HSPs)
chr8 (133-544)||(40336622-40337032)
[»] chr4 (3 HSPs)
chr4 (17-135)||(52884215-52884333)
chr4 (23-113)||(31913294-31913384)
chr4 (17-88)||(53403282-53403353)
[»] scaffold0361 (1 HSPs)
scaffold0361 (17-127)||(13382-13492)
[»] chr7 (1 HSPs)
chr7 (17-139)||(40718825-40718945)
[»] chr1 (1 HSPs)
chr1 (68-140)||(34145012-34145084)
[»] chr5 (1 HSPs)
chr5 (34-113)||(12463284-12463363)
[»] chr6 (1 HSPs)
chr6 (47-88)||(32819553-32819594)


Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 133 - 544
Target Start/End: Complemental strand, 40337032 - 40336622
Alignment:
Q  133 taaaagtcagatatgtgatgattcacacacacaaaagaaagtgagataggtgttgtactatgcataagttgctttcgattgttggatctagatgtattgc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  40337032 taaaagtcagatatgtgatgattcacacacacaaaagaaagtgagatgggtgttgtactatgcataagttgctttcgatcgttggatcaagatgtattgc 40336933  T
Q  233 ctttaaatcgagtgagacatggtggggtttattaatggtagaaacagaaaccacttgtgtatggtataacactgtcttatttgtgcattataaaattagc 332  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40336932 -tttaaatcgagtgagacatggtggggtttattaatggtagaaacagaaaccacttgtgtatggtataacactgtcttatttgtgcattataaaattagc 40336834  T
Q  333 ctatatttatagtattgtttttgttgaatcaatatcgttgaagttgatatataagtcaagattatacataaaggtaatgacgtcattgtcatatatattt 432  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  40336833 ctatatttatagtattgtttttgttgaatcaatatcgttcaagttgatatataagtcaagattatacataaaggtaatggcgtcattgtcgtatatattt 40336734  T
Q  433 gagcaatttccaaacattggtggtagagaaattgtgaccatgccttagcaatgttgtcttacaaggtgcttttgagacgtctataagttctagttcaact 532  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||| ||| ||||| ||| | ||| ||||||    
T  40336733 gagcaatttccaaacattggtggtagagaaattgtgactatgccttaccaatgttttcttacaaagtgctttttagatgtctacaaggtttagctcaact 40336634  T
Q  533 gtcaagatattg 544  Q
    || |||||||||    
T  40336633 gttaagatattg 40336622  T

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Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 52884215 - 52884333
Alignment:
Q  17 attctatctctcttctctatttcttggcgtaccaaacaagaaaagttgggtatctctctccaatttctctcttggcaatcgctctctcccctatttctct 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  52884215 attctatctctcttctctatttcttggcgtaccaaacaagagaagttgggtatctccctccaatttctctcttggcaatctctctcccccctatttctct 52884314  T
Q  117 gataccaaacagagtgtaa 135  Q
    |||||||||||||||||||    
T  52884315 gataccaaacagagtgtaa 52884333  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 31913384 - 31913294
Alignment:
Q  23 tctctcttctctatttcttggcgtaccaaacaagaaaagttgggtatctctctccaatttctctcttggcaatcgctctctcccctatttc 113  Q
    |||||||||| |||||||  || ||||||||| || ||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  31913384 tctctcttctttatttctctgcataccaaacaggagaagtttgatatctctctccaatttctctcttagcaatctctctctcccctatttc 31913294  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 53403353 - 53403282
Alignment:
Q  17 attctatctctcttctctatttcttggcgtaccaaacaagaaaagttgggtatctctctccaatttctctct 88  Q
    ||||| |||||||||  |||||||  || |||||||||||| ||||| | ||||||||||||||||||||||    
T  53403353 attctttctctcttccttatttctctgcataccaaacaagagaagtttgatatctctctccaatttctctct 53403282  T

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Target: scaffold0361 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 13492 - 13382
Alignment:
Q  17 attctatctctcttctctatttcttggcgtaccaaacaagaaaagttgggtatctctctccaatttctctcttggcaatcgctctctcccctatttctct 116  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13492 attctatctctcttctctatttcttggtgtaccaaacaagagaagttgggtatctctctccaatttctctcttggcaatctctctctcccctatttctct 13393  T
Q  117 gataccaaaca 127  Q
    |||||||||||    
T  13392 gataccaaaca 13382  T

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Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 40718825 - 40718945
Alignment:
Q  17 attctatctctcttctctatttcttggcgtaccaaacaagaaaagttgggtatctctctccaatttctctcttggcaatcgctctctcccctatttctct 116  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||||||  ||||||||||||||||||||||||||| ||||||||||||||| |||    
T  40718825 attctatctctcttctatatttcttggcataccaaacaagagaagttgggt--ctctctccaatttctctcttggcaatctctctctcccctatttatct 40718922  T
Q  117 gataccaaacagagtgtaaaagt 139  Q
    |||||||||||||||||||||||    
T  40718923 gataccaaacagagtgtaaaagt 40718945  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 34145084 - 34145012
Alignment:
Q  68 atctctctccaatttctctcttggcaatcgctctctcccctatttctctgataccaaacagagtgtaaaagtc 140  Q
    |||||||||||||||||||||  |||||  |||||||||||||||| |||  |||||||| ||||||||||||    
T  34145084 atctctctccaatttctctctcagcaatttctctctcccctatttcactgcaaccaaacacagtgtaaaagtc 34145012  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 12463363 - 12463284
Alignment:
Q  34 tatttcttggcgtaccaaacaagaaaagttgggtatctctctccaatttctctcttggcaatcgctctctcccctatttc 113  Q
    |||||||| || ||||||||| || ||||| | ||||||||||||||||||||||  | |||  ||||||||||||||||    
T  12463363 tatttcttagcataccaaacaggagaagttagatatctctctccaatttctctctcagaaatttctctctcccctatttc 12463284  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 32819553 - 32819594
Alignment:
Q  47 accaaacaagaaaagttgggtatctctctccaatttctctct 88  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||    
T  32819553 accaaacaagagaagttggttatctctcttcaatttctctct 32819594  T

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